Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT46_RS00740 Genome accession   NZ_CP035453
Coordinates   112208..112603 (+) Length   131 a.a.
NCBI ID   WP_136265158.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107208..117603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT46_RS00705 (ETT46_00705) - 108073..108381 (+) 309 WP_032467031.1 hypothetical protein -
  ETT46_RS00710 (ETT46_00710) proC 108464..109234 (-) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -
  ETT46_RS00715 (ETT46_00715) pepA 109282..110349 (-) 1068 WP_002992747.1 glutamyl aminopeptidase -
  ETT46_RS00725 (ETT46_00725) - 110814..111098 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  ETT46_RS00730 (ETT46_00730) - 111095..111412 (+) 318 WP_002986515.1 thioredoxin family protein -
  ETT46_RS00735 (ETT46_00735) ytpR 111430..112056 (+) 627 WP_030126924.1 YtpR family tRNA-binding protein -
  ETT46_RS00740 (ETT46_00740) ssbA 112208..112603 (+) 396 WP_136265158.1 single-stranded DNA-binding protein Machinery gene
  ETT46_RS00745 (ETT46_00745) - 112863..113504 (-) 642 WP_030126925.1 deoxynucleoside kinase -
  ETT46_RS00750 (ETT46_00750) dusB 113524..114501 (-) 978 WP_136265156.1 tRNA dihydrouridine synthase DusB -
  ETT46_RS00755 (ETT46_00755) hslO 114488..115360 (-) 873 WP_136075288.1 Hsp33 family molecular chaperone HslO -
  ETT46_RS00760 (ETT46_00760) nra 115486..117021 (-) 1536 WP_030126927.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14836.00 Da        Isoelectric Point: 8.0157

>NTDB_id=342386 ETT46_RS00740 WP_136265158.1 112208..112603(+) (ssbA) [Streptococcus pyogenes strain emm100]
MYNKVIAIGRLVAKPELVKTATDKHVARFSLAVNRRFKNASGEREADFISIVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=342386 ETT46_RS00740 WP_136265158.1 112208..112603(+) (ssbA) [Streptococcus pyogenes strain emm100]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTTTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATTTCAATTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405

Multiple sequence alignment