Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT59_RS00745 Genome accession   NZ_CP035440
Coordinates   111880..112275 (+) Length   131 a.a.
NCBI ID   WP_136020268.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 106880..117275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT59_RS00710 (ETT59_00710) - 107745..108053 (+) 309 WP_011284425.1 hypothetical protein -
  ETT59_RS00715 (ETT59_00715) proC 108136..108906 (-) 771 WP_136306009.1 pyrroline-5-carboxylate reductase -
  ETT59_RS00720 (ETT59_00720) pepA 108954..110021 (-) 1068 WP_002987798.1 glutamyl aminopeptidase -
  ETT59_RS00730 (ETT59_00730) - 110486..110770 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  ETT59_RS00735 (ETT59_00735) - 110767..111084 (+) 318 WP_002986515.1 thioredoxin family protein -
  ETT59_RS00740 (ETT59_00740) ytpR 111102..111728 (+) 627 WP_030126456.1 YtpR family tRNA-binding protein -
  ETT59_RS00745 (ETT59_00745) ssbA 111880..112275 (+) 396 WP_136020268.1 single-stranded DNA-binding protein Machinery gene
  ETT59_RS00750 (ETT59_00750) - 112535..113176 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  ETT59_RS00755 (ETT59_00755) dusB 113196..114173 (-) 978 WP_023611504.1 tRNA dihydrouridine synthase DusB -
  ETT59_RS00760 (ETT59_00760) hslO 114160..115032 (-) 873 WP_136074776.1 Hsp33 family molecular chaperone HslO -
  ETT59_RS00765 (ETT59_00765) rofA 115179..116672 (-) 1494 WP_136020271.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14874.05 Da        Isoelectric Point: 7.1668

>NTDB_id=341680 ETT59_RS00745 WP_136020268.1 111880..112275(+) (ssbA) [Streptococcus pyogenes strain emm124]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISIVVWEKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=341680 ETT59_RS00745 WP_136020268.1 111880..112275(+) (ssbA) [Streptococcus pyogenes strain emm124]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATTTCAATTGTTGTTT
GGGAAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

72.519

100

0.725
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment