Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   F6P95_RS02170 Genome accession   NZ_CP044293
Coordinates   420972..421628 (-) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain P276M     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 415972..426628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6P95_RS02140 (F6P95_02155) yecA 417223..417888 (-) 666 WP_000847882.1 UPF0149 family protein YecA -
  F6P95_RS02160 (F6P95_02175) pgsA 418538..419086 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F6P95_RS02165 (F6P95_02180) uvrC 419143..420975 (-) 1833 WP_157716824.1 excinuclease ABC subunit UvrC Machinery gene
  F6P95_RS02170 (F6P95_02185) letA 420972..421628 (-) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  F6P95_RS23300 (F6P95_02190) - 421770..421886 (+) 117 WP_001302039.1 hypothetical protein -
  F6P95_RS02175 (F6P95_02195) yecU 421924..422100 (+) 177 WP_001302050.1 protein YecU -
  F6P95_RS02180 (F6P95_02200) yecF 422087..422311 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  F6P95_RS02185 (F6P95_02205) sdiA 422379..423101 (-) 723 WP_001154273.1 transcriptional regulator SdiA -
  F6P95_RS02190 (F6P95_02210) tcyN 423331..424083 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  F6P95_RS02195 (F6P95_02215) tcyL 424080..424748 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  F6P95_RS02200 (F6P95_02220) dcyD 424763..425749 (-) 987 WP_001128219.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=341676 F6P95_RS02170 WP_000611338.1 420972..421628(-) (letA) [Escherichia coli strain P276M]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=341676 F6P95_RS02170 WP_000611338.1 420972..421628(-) (letA) [Escherichia coli strain P276M]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGCGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCAGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGCAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGTGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491

Multiple sequence alignment