Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   ETT59_RS00690 Genome accession   NZ_CP035440
Coordinates   104508..104942 (+) Length   144 a.a.
NCBI ID   WP_111711329.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm124     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99508..109942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT59_RS00660 (ETT59_00660) - 101177..101542 (+) 366 WP_002986560.1 DUF1033 family protein -
  ETT59_RS00665 (ETT59_00665) comYA 101635..102573 (+) 939 WP_023612548.1 competence type IV pilus ATPase ComGA Machinery gene
  ETT59_RS00670 (ETT59_00670) comYB 102509..103543 (+) 1035 WP_227878117.1 competence type IV pilus assembly protein ComGB Machinery gene
  ETT59_RS00675 (ETT59_00675) comYC 103545..103871 (+) 327 WP_136276522.1 competence type IV pilus major pilin ComGC Machinery gene
  ETT59_RS00680 (ETT59_00680) comGD 103846..104274 (+) 429 WP_136276529.1 competence type IV pilus minor pilin ComGD -
  ETT59_RS00685 (ETT59_00685) comGE 104231..104515 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE -
  ETT59_RS00690 (ETT59_00690) comYF 104508..104942 (+) 435 WP_111711329.1 competence type IV pilus minor pilin ComGF Machinery gene
  ETT59_RS00695 (ETT59_00695) comGG 104926..105252 (+) 327 WP_136276521.1 competence type IV pilus minor pilin ComGG -
  ETT59_RS00700 (ETT59_00700) comYH 105350..106303 (+) 954 WP_009880357.1 class I SAM-dependent methyltransferase Machinery gene
  ETT59_RS00705 (ETT59_00705) - 106362..107558 (+) 1197 WP_010921803.1 acetate kinase -
  ETT59_RS00710 (ETT59_00710) - 107745..108053 (+) 309 WP_011284425.1 hypothetical protein -
  ETT59_RS00715 (ETT59_00715) proC 108136..108906 (-) 771 WP_136306009.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16626.22 Da        Isoelectric Point: 10.1406

>NTDB_id=341677 ETT59_RS00690 WP_111711329.1 104508..104942(+) (comYF) [Streptococcus pyogenes strain emm124]
MSKQLSNIKAFTLLEALIALLVISGSLLVYQGLTQTLLKRSHYLAHHDQDNWLLFSHQLREELSGARFYKVADNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=341677 ETT59_RS00690 WP_111711329.1 104508..104942(+) (comYF) [Streptococcus pyogenes strain emm124]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTCCTAGAGGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCAAACCCTCCTTAAACGTAGCCATTACCTAGCCCATCATGATCAAGACAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTACAAAGTAGCTGATAATAAACTATACGTTGAAAAA
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGGTATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(42-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.079

96.528

0.493
  comYF Streptococcus mutans UA159

50.36

96.528

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

46.715

95.139

0.444
  comGF/cglF Streptococcus mitis NCTC 12261

44.776

93.056

0.417
  comGF/cglF Streptococcus pneumoniae Rx1

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae D39

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae R6

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae TIGR4

43.609

92.361

0.403
  comGF/cglF Streptococcus mitis SK321

42.857

92.361

0.396

Multiple sequence alignment