Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT65_RS00865 Genome accession   NZ_CP035434
Coordinates   127176..127580 (+) Length   134 a.a.
NCBI ID   WP_136097978.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm75.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 122176..132580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT65_RS00830 (ETT65_00830) - 123041..123349 (+) 309 Protein_113 hypothetical protein -
  ETT65_RS00835 (ETT65_00835) proC 123432..124202 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  ETT65_RS00840 (ETT65_00840) pepA 124250..125317 (-) 1068 WP_136038526.1 glutamyl aminopeptidase -
  ETT65_RS00850 (ETT65_00850) - 125782..126066 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  ETT65_RS00855 (ETT65_00855) - 126063..126380 (+) 318 WP_011528167.1 thioredoxin family protein -
  ETT65_RS00860 (ETT65_00860) ytpR 126398..127024 (+) 627 WP_011017256.1 YtpR family tRNA-binding protein -
  ETT65_RS00865 (ETT65_00865) ssbA 127176..127580 (+) 405 WP_136097978.1 single-stranded DNA-binding protein Machinery gene
  ETT65_RS00870 (ETT65_00870) - 127840..128481 (-) 642 WP_136018222.1 deoxynucleoside kinase -
  ETT65_RS00875 (ETT65_00875) dusB 128501..129478 (-) 978 WP_136097979.1 tRNA dihydrouridine synthase DusB -
  ETT65_RS00880 (ETT65_00880) hslO 129465..130337 (-) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  ETT65_RS00885 (ETT65_00885) rofA 130484..131977 (-) 1494 WP_136097980.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15043.27 Da        Isoelectric Point: 8.0157

>NTDB_id=341359 ETT65_RS00865 WP_136097978.1 127176..127580(+) (ssbA) [Streptococcus pyogenes strain emm75.1]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVDLVLGEDTLPF

Nucleotide


Download         Length: 405 bp        

>NTDB_id=341359 ETT65_RS00865 WP_136097978.1 127176..127580(+) (ssbA) [Streptococcus pyogenes strain emm75.1]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTTGATTTAGTCTTAGGAGAAGATACTCTTCCCT
TTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

71.642

100

0.716
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.149

100

0.701
  ssbB/cilA Streptococcus mitis NCTC 12261

67.91

100

0.679
  ssbB/cilA Streptococcus pneumoniae Rx1

67.91

100

0.679
  ssbB/cilA Streptococcus pneumoniae D39

67.91

100

0.679
  ssbB/cilA Streptococcus pneumoniae R6

67.91

100

0.679
  ssbB/cilA Streptococcus pneumoniae TIGR4

67.91

100

0.679
  ssbB/cilA Streptococcus mitis SK321

67.164

100

0.672
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

85.075

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

84.328

0.396
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

79.104

0.388

Multiple sequence alignment