Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT69_RS00745 Genome accession   NZ_CP035430
Coordinates   112899..113294 (+) Length   131 a.a.
NCBI ID   WP_136019109.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107899..118294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT69_RS00710 (ETT69_00710) - 108764..109072 (+) 309 Protein_89 hypothetical protein -
  ETT69_RS00715 (ETT69_00715) proC 109155..109925 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  ETT69_RS00720 (ETT69_00720) pepA 109973..111040 (-) 1068 WP_136019107.1 glutamyl aminopeptidase -
  ETT69_RS00730 (ETT69_00730) - 111505..111789 (+) 285 WP_136019108.1 DUF4651 domain-containing protein -
  ETT69_RS00735 (ETT69_00735) - 111786..112103 (+) 318 WP_002992751.1 thioredoxin family protein -
  ETT69_RS00740 (ETT69_00740) ytpR 112121..112747 (+) 627 WP_011017256.1 YtpR family tRNA-binding protein -
  ETT69_RS00745 (ETT69_00745) ssbA 112899..113294 (+) 396 WP_136019109.1 single-stranded DNA-binding protein Machinery gene
  ETT69_RS00750 (ETT69_00750) - 113554..114195 (-) 642 WP_136019110.1 deoxynucleoside kinase -
  ETT69_RS00755 (ETT69_00755) dusB 114215..115192 (-) 978 WP_110410738.1 tRNA dihydrouridine synthase DusB -
  ETT69_RS00760 (ETT69_00760) hslO 115179..116051 (-) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  ETT69_RS00765 (ETT69_00765) rofA 116198..117691 (-) 1494 WP_136019111.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14887.09 Da        Isoelectric Point: 8.8844

>NTDB_id=341149 ETT69_RS00745 WP_136019109.1 112899..113294(+) (ssbA) [Streptococcus pyogenes strain emm55]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWRKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=341149 ETT69_RS00745 WP_136019109.1 112899..113294(+) (ssbA) [Streptococcus pyogenes strain emm55]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGAGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGTGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405

Multiple sequence alignment