Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FOB77_RS03100 Genome accession   NZ_CP044091
Coordinates   559504..560475 (-) Length   323 a.a.
NCBI ID   WP_025197279.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_669     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 554504..565475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB77_RS03065 (FOB77_03065) - 554793..555986 (-) 1194 WP_000047535.1 acetate kinase -
  FOB77_RS03070 (FOB77_03070) comGH 556018..556992 (-) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  FOB77_RS03075 (FOB77_03075) comGG 557107..557478 (-) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  FOB77_RS03080 (FOB77_03080) comGF 557456..557917 (-) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  FOB77_RS03085 (FOB77_03085) comGE 557871..558170 (-) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  FOB77_RS03090 (FOB77_03090) comGD 558142..558570 (-) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOB77_RS03095 (FOB77_03095) comGB 558567..559610 (-) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  FOB77_RS03100 (FOB77_03100) comGA 559504..560475 (-) 972 WP_025197279.1 competence type IV pilus ATPase ComGA Machinery gene
  FOB77_RS03110 (FOB77_03110) - 560648..561013 (-) 366 WP_000285373.1 DUF1033 family protein -
  FOB77_RS03115 (FOB77_03115) rpoC 561127..564777 (-) 3651 WP_000228729.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 36851.29 Da        Isoelectric Point: 6.6157

>NTDB_id=340371 FOB77_RS03100 WP_025197279.1 559504..560475(-) (comGA) [Streptococcus agalactiae strain FDAARGOS_669]
MVQSLAKQVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGTRELYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSISGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF

Nucleotide


Download         Length: 972 bp        

>NTDB_id=340371 FOB77_RS03100 WP_025197279.1 559504..560475(-) (comGA) [Streptococcus agalactiae strain FDAARGOS_669]
ATGGTTCAATCATTAGCAAAGCAAGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTACAAGAGAGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTTCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAACTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Streptococcus mutans UA159

68.167

96.285

0.656
  comGA Streptococcus mutans UA140

68.167

96.285

0.656
  comGA Streptococcus gordonii str. Challis substr. CH1

63.009

98.762

0.622
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.379

96.285

0.601
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

61.415

96.285

0.591
  comGA/cglA/cilD Streptococcus pneumoniae D39

61.415

96.285

0.591
  comGA/cglA/cilD Streptococcus pneumoniae R6

61.415

96.285

0.591
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

61.415

96.285

0.591
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.29

95.975

0.588
  comGA Lactococcus lactis subsp. cremoris KW2

50.311

99.69

0.502