Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ERL55_RS12465 Genome accession   NZ_CP035376
Coordinates   2703236..2704507 (+) Length   423 a.a.
NCBI ID   WP_129136699.1    Uniprot ID   -
Organism   Luteimonas sp. YGD11-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2698236..2709507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL55_RS12440 - 2698462..2698746 (+) 285 WP_129136694.1 helix-turn-helix transcriptional regulator -
  ERL55_RS12445 - 2698743..2700029 (+) 1287 WP_129136695.1 HipA domain-containing protein -
  ERL55_RS12450 - 2700032..2700304 (+) 273 WP_129136696.1 hypothetical protein -
  ERL55_RS12455 pilA/pilA1 2700575..2701006 (+) 432 WP_129136697.1 pilin Machinery gene
  ERL55_RS12460 pilB 2701323..2703044 (+) 1722 WP_129136698.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ERL55_RS12465 pilC 2703236..2704507 (+) 1272 WP_129136699.1 type II secretion system F family protein Machinery gene
  ERL55_RS12470 pilD 2704545..2705411 (+) 867 WP_129136700.1 A24 family peptidase Machinery gene
  ERL55_RS12475 - 2705465..2705809 (-) 345 WP_129136701.1 hypothetical protein -
  ERL55_RS12480 xth 2706232..2707098 (+) 867 WP_129136702.1 exodeoxyribonuclease III -
  ERL55_RS12485 - 2707215..2707391 (+) 177 WP_129136703.1 DUF3606 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46067.45 Da        Isoelectric Point: 10.1593

>NTDB_id=339427 ERL55_RS12465 WP_129136699.1 2703236..2704507(+) (pilC) [Luteimonas sp. YGD11-2]
MSVTRSAAKSAARKPVSPGRQGVTLETFVWEGTDKRGKKMKGEQSAKNANLLKAELRRQGISPGVVRPKKKPLFGGTGKK
ITPKDIAVFSRQIATMIKSGVPIVQALEIIGNGHKNPKMADMINAIRVDIENGTAFAEALGKYPVQFDELTRNLVRVGES
AGVLETVLDSIASYKENIETLKGKIKKALFYPITVIAVAIIVSAILLIFVVPQFESVFSNFGAELPAFTQMIVAASRFMV
AYWWLILGIVLAAVFGFIYAYKRSPSLQHGMDRFVLKIPVIGQIMHNSAIARFSRTLATTFKAGVPLVEALESVAGATGN
MVYEKATWLIRDDVSVGYPMNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADFYEEEVNNAVDALASLIEPMIMIF
IGVVVGGMVIGMYLPIFKLAAVV

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=339427 ERL55_RS12465 WP_129136699.1 2703236..2704507(+) (pilC) [Luteimonas sp. YGD11-2]
ATGTCCGTGACCCGATCCGCCGCCAAGTCCGCGGCCCGCAAGCCCGTGTCGCCCGGTCGCCAGGGCGTGACCCTGGAGAC
GTTCGTCTGGGAGGGCACCGACAAGCGCGGCAAGAAGATGAAGGGCGAGCAGTCGGCGAAGAACGCCAACCTGCTGAAGG
CCGAGCTGCGCAGGCAGGGTATCAGCCCGGGCGTGGTCAGGCCGAAGAAGAAGCCGCTGTTCGGCGGGACCGGCAAGAAG
ATCACCCCGAAGGACATCGCGGTGTTCAGCCGGCAGATCGCCACGATGATCAAGTCGGGCGTGCCGATCGTGCAGGCCCT
GGAGATCATCGGCAACGGGCACAAGAACCCCAAGATGGCCGACATGATCAACGCCATCCGTGTCGACATCGAAAACGGCA
CCGCGTTTGCCGAGGCGCTGGGCAAATACCCGGTGCAGTTCGACGAACTCACCCGCAACCTGGTACGCGTGGGCGAATCC
GCCGGTGTTCTGGAGACAGTGCTCGACAGCATTGCTTCCTACAAGGAAAACATCGAGACCCTGAAGGGCAAGATCAAGAA
GGCGCTCTTCTATCCCATAACGGTCATCGCCGTCGCGATCATCGTCAGCGCGATCCTCTTGATCTTTGTGGTGCCGCAGT
TTGAATCGGTGTTCTCCAATTTTGGCGCTGAACTTCCTGCTTTCACCCAGATGATCGTCGCCGCCAGCCGCTTCATGGTG
GCGTACTGGTGGTTGATCCTCGGCATCGTGCTGGCAGCAGTCTTCGGCTTCATCTACGCCTACAAGCGCTCGCCATCCCT
GCAGCACGGCATGGACCGCTTCGTACTGAAGATTCCGGTGATCGGCCAGATCATGCACAACTCTGCCATCGCCCGTTTCA
GCCGTACGCTGGCGACCACCTTCAAGGCAGGTGTGCCACTGGTGGAGGCGCTCGAATCCGTCGCCGGTGCGACCGGCAAC
ATGGTCTACGAAAAGGCCACCTGGCTGATCCGCGACGATGTCTCCGTCGGCTACCCGATGAACATGGCGATGAAGCAGGT
CAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCGATCGGTGAGGAAGCCGGCGCGCTCGACACCATGCTGTTCAAGG
TGGCGGATTTCTACGAGGAAGAGGTCAACAACGCGGTCGATGCACTGGCCAGCCTGATCGAGCCGATGATCATGATCTTC
ATCGGCGTGGTCGTCGGCGGCATGGTCATTGGCATGTACCTGCCGATCTTCAAGCTGGCGGCCGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.89

94.326

0.527
  pilC Pseudomonas stutzeri DSM 10701

54.798

93.617

0.513
  pilC Acinetobacter baylyi ADP1

52.645

93.853

0.494
  pilC Acinetobacter baumannii D1279779

51.605

95.745

0.494
  pilG Neisseria gonorrhoeae MS11

44.472

94.09

0.418
  pilG Neisseria meningitidis 44/76-A

44.221

94.09

0.416
  pilC Vibrio cholerae strain A1552

40.447

95.272

0.385
  pilC Vibrio campbellii strain DS40M4

39.651

94.799

0.376
  pilC Thermus thermophilus HB27

39.152

94.799

0.371

Multiple sequence alignment