Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EKL02_RS04510 Genome accession   NZ_CP035311
Coordinates   1002926..1004158 (-) Length   410 a.a.
NCBI ID   WP_128900932.1    Uniprot ID   -
Organism   Janthinobacterium sp. 17J80-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 997926..1009158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKL02_RS04480 (EKL02_04480) - 999095..999961 (+) 867 WP_128900926.1 ATP-binding protein -
  EKL02_RS04485 (EKL02_04485) - 999983..1000393 (+) 411 WP_128900927.1 NUDIX domain-containing protein -
  EKL02_RS04490 (EKL02_04490) yacG 1000404..1000580 (-) 177 WP_128900928.1 DNA gyrase inhibitor YacG -
  EKL02_RS04495 (EKL02_04495) zapD 1000595..1001350 (-) 756 WP_128900929.1 cell division protein ZapD -
  EKL02_RS04500 (EKL02_04500) coaE 1001437..1002045 (-) 609 WP_128900930.1 dephospho-CoA kinase -
  EKL02_RS04505 (EKL02_04505) pilD 1002060..1002926 (-) 867 WP_128900931.1 A24 family peptidase Machinery gene
  EKL02_RS04510 (EKL02_04510) pilC 1002926..1004158 (-) 1233 WP_128900932.1 type II secretion system F family protein Machinery gene
  EKL02_RS04515 (EKL02_04515) pilB 1004176..1005903 (-) 1728 WP_128900933.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EKL02_RS18120 - 1006153..1006329 (-) 177 WP_164931949.1 NF038104 family lipoprotein -
  EKL02_RS04525 (EKL02_04525) ispB 1006602..1007531 (-) 930 WP_241687848.1 octaprenyl diphosphate synthase -
  EKL02_RS04530 (EKL02_04530) rplU 1007839..1008150 (+) 312 WP_119787204.1 50S ribosomal protein L21 -
  EKL02_RS04535 (EKL02_04535) rpmA 1008188..1008445 (+) 258 WP_128900935.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44639.52 Da        Isoelectric Point: 10.0199

>NTDB_id=339261 EKL02_RS04510 WP_128900932.1 1002926..1004158(-) (pilC) [Janthinobacterium sp. 17J80-10]
MATAARKHTASGTAKEAVYVWQGKDRQGKIVQGEMRANGEALVNATLRRQGIMVTKIKKRSFKSGKKITEKDITLFTRQL
ATMMKAGVPLLQSFEIVAKGHANPSVAKLLLDIRGDVETGTSLNQAFRKYPLYFDTLFCNLVSAGEQAGILEDLLNRLAI
YKEKTLAIKGKIKSALFYPVSILVVAFVVTSVIMIWVVPAFKEVFASFGADLPAPTLMVMAVSDFFVTYWYLIFGGLFAA
LYIFFQSWKRSVKVQHFMDRTLLKAPVFGDVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNAVYVDATKRIQTE
VSTGTSLTAAMQNANVFPSMVTQMVAIGEESGALDSMLGKVADFYEAEVDEAVASISSLMEPFIMAILGVIIGGLVVAMY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=339261 EKL02_RS04510 WP_128900932.1 1002926..1004158(-) (pilC) [Janthinobacterium sp. 17J80-10]
ATGGCCACAGCCGCACGCAAACATACAGCCTCAGGCACGGCGAAGGAAGCCGTCTATGTCTGGCAAGGCAAGGATCGGCA
AGGCAAGATCGTACAAGGCGAGATGCGAGCCAATGGCGAAGCCCTGGTCAATGCCACCTTGCGCCGGCAAGGCATCATGG
TCACAAAGATCAAGAAGCGTTCCTTCAAAAGCGGCAAGAAAATTACCGAGAAGGACATCACGCTGTTCACCCGCCAGCTG
GCGACCATGATGAAGGCGGGCGTGCCGCTATTGCAATCGTTTGAAATCGTTGCCAAAGGCCATGCCAACCCCTCCGTCGC
CAAGCTCTTGCTGGATATCCGTGGCGATGTGGAAACCGGTACCAGCCTGAACCAGGCATTCCGCAAATACCCCTTGTATT
TCGATACACTTTTTTGCAACCTCGTCAGTGCAGGTGAACAGGCAGGTATCCTGGAAGACTTGCTTAACCGCCTGGCGATC
TACAAGGAAAAAACCCTGGCGATCAAGGGCAAGATCAAGTCAGCCTTGTTTTATCCAGTTTCGATTCTGGTGGTGGCCTT
CGTCGTTACTTCCGTCATCATGATCTGGGTGGTTCCGGCATTCAAGGAAGTCTTTGCCAGCTTTGGTGCCGATTTGCCAG
CACCTACGCTCATGGTGATGGCGGTTTCAGATTTCTTTGTTACTTATTGGTACCTCATCTTTGGCGGCCTGTTTGCCGCG
CTGTACATATTTTTTCAATCCTGGAAACGCTCGGTAAAGGTCCAGCACTTCATGGACCGTACGCTGCTCAAGGCACCAGT
ATTCGGCGACGTCATCCGCAAGGCGACGATCGCCCGCTGGACCAGGACGCTGGCCACCATGTTTGCCGCTGGTGTGCCAC
TGGTTGAATCGCTGGACTCGGTTGGCGGCGCCTCAGGCAATGCCGTGTATGTCGATGCCACCAAAAGAATCCAGACGGAG
GTCAGCACCGGCACCAGCCTCACTGCTGCCATGCAAAATGCCAATGTATTTCCGAGCATGGTTACGCAAATGGTGGCCAT
TGGCGAAGAATCCGGCGCGCTTGATTCCATGCTTGGCAAGGTTGCGGATTTTTATGAGGCCGAAGTCGATGAAGCGGTTG
CCTCAATCTCCAGCCTGATGGAACCGTTCATCATGGCGATCCTCGGCGTAATCATTGGCGGCCTCGTGGTTGCCATGTAC
CTGCCGATCTTCAAATTAGGTTCAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.386

97.317

0.529
  pilC Acinetobacter baumannii D1279779

54.156

96.829

0.524
  pilG Neisseria gonorrhoeae MS11

53.652

96.829

0.52
  pilG Neisseria meningitidis 44/76-A

53.652

96.829

0.52
  pilC Acinetobacter baylyi ADP1

51.724

99.024

0.512
  pilC Legionella pneumophila strain ERS1305867

52.778

96.585

0.51
  pilC Vibrio cholerae strain A1552

40.909

96.585

0.395
  pilC Vibrio campbellii strain DS40M4

40.05

96.829

0.388
  pilC Thermus thermophilus HB27

37.831

100

0.383

Multiple sequence alignment