Detailed information NTG0339260

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EKL02_RS04505
• Genome accession: NZ_CP035311
• Coordinates: 1002060..1002926 (-)
• Length: 288 a.a.
• NCBI ID: WP_128900931.1
• Uniprot ID: A0A410UQB3
• Organism: Janthinobacterium sp. 17J80-10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 997060..1007926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKL02_RS04475 (EKL02_04475)	argJ	997836..999074 (+)	1239	WP_128900925.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
EKL02_RS04480 (EKL02_04480)	-	999095..999961 (+)	867	WP_128900926.1	ATP-binding protein	-
EKL02_RS04485 (EKL02_04485)	-	999983..1000393 (+)	411	WP_128900927.1	NUDIX domain-containing protein	-
EKL02_RS04490 (EKL02_04490)	yacG	1000404..1000580 (-)	177	WP_128900928.1	DNA gyrase inhibitor YacG	-
EKL02_RS04495 (EKL02_04495)	zapD	1000595..1001350 (-)	756	WP_128900929.1	cell division protein ZapD	-
EKL02_RS04500 (EKL02_04500)	coaE	1001437..1002045 (-)	609	WP_128900930.1	dephospho-CoA kinase	-
EKL02_RS04505 (EKL02_04505)	pilD	1002060..1002926 (-)	867	WP_128900931.1	A24 family peptidase	Machinery gene
EKL02_RS04510 (EKL02_04510)	pilC	1002926..1004158 (-)	1233	WP_128900932.1	type II secretion system F family protein	Machinery gene
EKL02_RS04515 (EKL02_04515)	pilB	1004176..1005903 (-)	1728	WP_128900933.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EKL02_RS18120	-	1006153..1006329 (-)	177	WP_164931949.1	NF038104 family lipoprotein	-
EKL02_RS04525 (EKL02_04525)	ispB	1006602..1007531 (-)	930	WP_241687848.1	octaprenyl diphosphate synthase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31070.79 Da
• Isoelectric Point: 7.0904

>NTDB_id=339260 EKL02_RS04505 WP_128900931.1 1002060..1002926(-) (pilD) [Janthinobacterium sp. 17J80-10]
MWDALLFAAPGTLASAAVAGLIGLLVGSFLNVVIHRMPKMMQRESDNYVAHESGKPLPHQDRYDLVMPRSGCPHCGHAIT
AWENIPVISYLVLRGKCVACKAPISPRYPAVELLTGALSFFLVWHFGSGAAGLASVVFAWLLIAMTFIDADTQLLPDDLT
YPLLWAGLLINLQGTFVPLTDAVIGAAAGYLVLWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWKMLPAIILLSSVVG
AIVGITLILLSKHGRENPMPFGPYLAAAGMIAMVYGNTITQAYLDYLF

Nucleotide

• Length: 867 bp

>NTDB_id=339260 EKL02_RS04505 WP_128900931.1 1002060..1002926(-) (pilD) [Janthinobacterium sp. 17J80-10]
ATGTGGGATGCGCTCTTGTTTGCGGCGCCTGGCACCCTGGCCAGCGCTGCAGTTGCCGGCCTAATCGGCCTTCTGGTCGG
CAGTTTTCTGAACGTCGTCATCCATCGCATGCCCAAAATGATGCAGCGCGAGTCGGACAATTATGTCGCCCATGAAAGCG
GCAAGCCGCTGCCGCACCAGGATCGCTATGACCTGGTCATGCCGCGCTCCGGATGCCCACACTGCGGCCACGCCATCACC
GCCTGGGAAAACATTCCTGTAATCAGCTATCTTGTCCTGCGCGGCAAATGCGTCGCCTGCAAGGCACCGATTTCGCCGCG
CTATCCGGCAGTAGAATTGCTGACCGGCGCCCTGTCCTTTTTTCTGGTCTGGCATTTCGGCAGCGGTGCAGCGGGCCTGG
CAAGCGTCGTCTTTGCCTGGCTTCTGATCGCCATGACGTTCATCGATGCCGATACCCAGTTATTGCCTGACGACCTGACC
TATCCGCTGCTGTGGGCTGGATTGCTGATCAACCTGCAGGGCACCTTCGTGCCGCTGACCGACGCGGTCATCGGCGCAGC
TGCCGGCTATCTTGTGCTATGGTCGGTCTACTGGCTGTTCAAACTGGCCACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGCTCCTGGCAGCACTGGGCGCCTGGCTAGGCTGGAAAATGCTGCCGGCAATTATTCTTCTGTCTTCCGTGGTCGGC
GCTATCGTTGGCATCACCTTGATCCTGCTTAGCAAACATGGGCGGGAAAACCCGATGCCTTTCGGCCCCTATCTTGCCGC
TGCCGGCATGATCGCCATGGTGTACGGAAACACGATTACCCAGGCTTATCTCGATTACTTGTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

3D structure

• AlphaFold DB: A0A410UQB3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	56.506	93.403	0.528
pilD	Vibrio cholerae strain A1552	55.185	93.75	0.517
pilD	Acinetobacter baumannii D1279779	49.301	99.306	0.49
pilD	Acinetobacter nosocomialis M2	48.252	99.306	0.479
pilD	Neisseria gonorrhoeae MS11	46.816	92.708	0.434