Detailed information NTG0337442

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EQH34_RS06780
• Genome accession: NZ_CP035246
• Coordinates: 1362738..1363208 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609611.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901941
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1357738..1368208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH34_RS06750 (EQH34_07180)	-	1358313..1359248 (-)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-
EQH34_RS06755 (EQH34_07185)	-	1359319..1359618 (-)	300	WP_000349602.1	GIY-YIG nuclease family protein	-
EQH34_RS06760 (EQH34_07190)	-	1359608..1360357 (-)	750	WP_000390784.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
EQH34_RS06765 (EQH34_07195)	-	1360411..1360770 (-)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
EQH34_RS06770 (EQH34_07200)	-	1360772..1362172 (-)	1401	WP_000339014.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
EQH34_RS06775 (EQH34_07205)	rpsR	1362467..1362706 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
EQH34_RS06780 (EQH34_07210)	ssbA	1362738..1363208 (-)	471	WP_000609611.1	single-stranded DNA-binding protein SsbA	Machinery gene
EQH34_RS06785 (EQH34_07215)	rpsF	1363220..1363510 (-)	291	WP_001151785.1	30S ribosomal protein S6	-
EQH34_RS06790 (EQH34_07220)	asnS	1363663..1365006 (-)	1344	WP_000167151.1	asparagine--tRNA ligase	-
EQH34_RS06795 (EQH34_07225)	-	1365024..1365389 (-)	366	WP_000565235.1	VOC family protein	-
EQH34_RS06800 (EQH34_07230)	-	1365382..1366569 (-)	1188	WP_000777784.1	pyridoxal phosphate-dependent aminotransferase	-
EQH34_RS06805 (EQH34_07235)	-	1366566..1367054 (-)	489	WP_000747252.1	DUF5590 domain-containing protein	-
EQH34_RS06810 (EQH34_07245)	-	1367375..1367923 (+)	549	WP_000039617.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17381.24 Da
• Isoelectric Point: 5.2065

>NTDB_id=337442 EQH34_RS06780 WP_000609611.1 1362738..1363208(-) (ssbA) [Streptococcus pneumoniae strain TVO_1901941]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVRESHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=337442 EQH34_RS06780 WP_000609611.1 1362738..1363208(-) (ssbA) [Streptococcus pneumoniae strain TVO_1901941]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGAGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	53.672	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB/cilA	Streptococcus pneumoniae TIGR4	51.282	75	0.385
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae R6	50.427	75	0.378
ssbB/cilA	Streptococcus mitis SK321	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae D39	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssb	Glaesserella parasuis strain SC1401	32.022	100	0.365