Detailed information NTG0334900

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EQJ95_RS01990
• Genome accession: NZ_CP035154
• Coordinates: 433494..433940 (+)
• Length: 148 a.a.
• NCBI ID: WP_065124802.1
• Uniprot ID: -
• Organism: Pediococcus acidilactici strain SRCM103387
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 428494..438940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQJ95_RS01950 (EQJ95_01950)	-	428585..428800 (+)	216	WP_128472028.1	hypothetical protein	-
EQJ95_RS01955 (EQJ95_01955)	-	428883..429350 (+)	468	WP_128472029.1	helix-turn-helix transcriptional regulator	-
EQJ95_RS01960 (EQJ95_01960)	-	429332..429604 (+)	273	WP_128472030.1	hypothetical protein	-
EQJ95_RS10180	-	429615..429758 (+)	144	WP_159208631.1	hypothetical protein	-
EQJ95_RS01965 (EQJ95_01965)	-	429851..430744 (+)	894	WP_128472031.1	DUF1351 domain-containing protein	-
EQJ95_RS01970 (EQJ95_01970)	-	430747..431583 (+)	837	WP_128472032.1	ERF family protein	-
EQJ95_RS01975 (EQJ95_01975)	-	431576..432412 (+)	837	WP_128472033.1	helix-turn-helix domain-containing protein	-
EQJ95_RS01980 (EQJ95_01980)	-	432417..433139 (+)	723	WP_128472034.1	putative HNHc nuclease	-
EQJ95_RS01985 (EQJ95_01985)	-	433084..433491 (+)	408	WP_032540532.1	hypothetical protein	-
EQJ95_RS01990 (EQJ95_01990)	ssb	433494..433940 (+)	447	WP_065124802.1	single-stranded DNA-binding protein	Machinery gene
EQJ95_RS01995 (EQJ95_01995)	-	433951..434298 (+)	348	WP_065124801.1	DUF1642 domain-containing protein	-
EQJ95_RS02000 (EQJ95_02000)	-	434295..434519 (+)	225	WP_065124800.1	hypothetical protein	-
EQJ95_RS10185	-	434539..434697 (+)	159	WP_153903504.1	hypothetical protein	-
EQJ95_RS02005 (EQJ95_02005)	-	435037..435468 (+)	432	WP_065124799.1	ArpU family phage packaging/lysis transcriptional regulator	-
EQJ95_RS02015 (EQJ95_02015)	-	436081..436749 (+)	669	WP_065124798.1	hypothetical protein	-
EQJ95_RS02020 (EQJ95_02020)	-	436818..437504 (+)	687	WP_032540563.1	terminase	-
EQJ95_RS02025 (EQJ95_02025)	-	437488..438801 (+)	1314	WP_128472035.1	PBSX family phage terminase large subunit	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 16646.32 Da
• Isoelectric Point: 5.7209

>NTDB_id=334900 EQJ95_RS01990 WP_065124802.1 433494..433940(+) (ssb) [Pediococcus acidilactici strain SRCM103387]
MINRTVLVGRLTKDPEIRYTQSGMAVANFTMAVNRQFTNANGEREADFISCIVWRKAAENFCNFTHKGSLVGIDGRIQTS
SYEKEGQRVYATQVVVDSFSLLEPKQQSQQRGQQSNASDALHNNFGQPTNNYSQNNNDFGIDDNDLPF

Nucleotide

• Length: 447 bp

>NTDB_id=334900 EQJ95_RS01990 WP_065124802.1 433494..433940(+) (ssb) [Pediococcus acidilactici strain SRCM103387]
ATGATTAATCGAACCGTATTAGTCGGACGCCTAACCAAGGATCCAGAAATCCGTTATACCCAATCAGGGATGGCGGTGGC
CAACTTTACTATGGCCGTGAACCGGCAGTTCACCAACGCTAATGGCGAGCGAGAAGCGGACTTTATCAGCTGTATTGTCT
GGAGAAAGGCGGCCGAAAACTTCTGTAATTTTACCCACAAAGGATCATTGGTCGGGATTGATGGTCGGATTCAAACTAGT
TCGTACGAAAAGGAAGGTCAACGCGTGTATGCTACACAAGTGGTTGTAGATAGTTTCTCGTTGCTTGAACCAAAGCAACA
AAGCCAACAACGTGGCCAGCAATCCAACGCTAGCGATGCTTTGCATAACAATTTCGGACAACCTACTAACAATTATAGCC
AGAATAATAACGATTTCGGCATCGACGATAATGATTTGCCGTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	54.706	100	0.628
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.837	100	0.568
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.455	74.324	0.412
ssbB	Streptococcus sobrinus strain NIDR 6715-7	38.514	100	0.385
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.838	100	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	37.838	100	0.378
ssb	Vibrio cholerae strain A1552	31.977	100	0.372
ssbB/cilA	Streptococcus pneumoniae Rx1	37.162	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	37.162	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	37.162	100	0.372
ssbB/cilA	Streptococcus mitis SK321	37.162	100	0.372