Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SZO_RS09585 Genome accession   NC_012470
Coordinates   2046841..2047236 (-) Length   131 a.a.
NCBI ID   WP_012678670.1    Uniprot ID   A0A7Z9D3W7
Organism   Streptococcus equi subsp. zooepidemicus     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2041841..2052236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS09565 (SZO_18390) - 2042630..2043433 (-) 804 WP_012678666.1 ABC transporter ATP-binding protein -
  SZO_RS09570 (SZO_18400) - 2043442..2044326 (-) 885 WP_012678667.1 ABC transporter permease -
  SZO_RS09575 (SZO_18410) - 2044441..2045403 (-) 963 WP_012678668.1 ABC transporter substrate-binding protein -
  SZO_RS09580 (SZO_18420) - 2045430..2046395 (-) 966 WP_012678669.1 ABC transporter substrate-binding protein -
  SZO_RS09585 (SZO_18430) ssbA 2046841..2047236 (-) 396 WP_012678670.1 single-stranded DNA-binding protein Machinery gene
  SZO_RS09590 (SZO_18440) - 2047348..2048061 (+) 714 WP_012678671.1 class I SAM-dependent methyltransferase -
  SZO_RS09595 (SZO_18450) ytpR 2048363..2048989 (-) 627 WP_012678672.1 YtpR family tRNA-binding protein -
  SZO_RS09600 (SZO_18460) - 2049004..2049321 (-) 318 WP_012678673.1 thioredoxin family protein -
  SZO_RS09605 (SZO_18470) - 2049318..2049602 (-) 285 WP_012678674.1 DUF4651 domain-containing protein -
  SZO_RS09610 (SZO_18480) pepA 2049997..2051064 (+) 1068 WP_012678675.1 glutamyl aminopeptidase -
  SZO_RS09615 (SZO_18490) proC 2051148..2051921 (+) 774 WP_012678676.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14768.92 Da        Isoelectric Point: 8.9315

>NTDB_id=33489 SZO_RS09585 WP_012678670.1 2046841..2047236(-) (ssbA) [Streptococcus equi subsp. zooepidemicus]
MYNKVILIGRLVAKPELNKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=33489 SZO_RS09585 WP_012678670.1 2046841..2047236(-) (ssbA) [Streptococcus equi subsp. zooepidemicus]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAAACAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACATTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTTGATTTTATCAATGCTGTTGCTT
GGGGAGGCTTGGCTGAAACCTTGGCTTCCTATGCTAGTAAGGGAAGCCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCTGGTCAGACTCATTTTGTGACAGAGGTCTTGTGTCACTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGGGCCATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTAGCCTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z9D3W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment