Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EQJ92_RS05170 Genome accession   NZ_CP035151
Coordinates   1070110..1070535 (-) Length   141 a.a.
NCBI ID   WP_128688459.1    Uniprot ID   -
Organism   Pediococcus acidilactici strain SRCM103367     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1065110..1075535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ92_RS09760 - 1065689..1065865 (-) 177 WP_155569866.1 hypothetical protein -
  EQJ92_RS05135 (EQJ92_05135) - 1065870..1066067 (-) 198 WP_128688452.1 hypothetical protein -
  EQJ92_RS09765 - 1066071..1066217 (-) 147 WP_164906215.1 hypothetical protein -
  EQJ92_RS05140 (EQJ92_05140) - 1066268..1066639 (-) 372 WP_128688453.1 N-acetylmuramoyl-L-alanine amidase -
  EQJ92_RS09770 - 1066626..1066775 (-) 150 WP_164906216.1 hypothetical protein -
  EQJ92_RS05145 (EQJ92_05145) - 1066772..1067173 (-) 402 WP_164906217.1 RusA family crossover junction endodeoxyribonuclease -
  EQJ92_RS05150 (EQJ92_05150) - 1067154..1067783 (-) 630 WP_128688455.1 RNA polymerase subunit sigma-70 -
  EQJ92_RS05155 (EQJ92_05155) - 1067901..1068716 (-) 816 WP_128688456.1 ATP-binding protein -
  EQJ92_RS09950 (EQJ92_05160) - 1068697..1069419 (-) 723 WP_128688457.1 hypothetical protein -
  EQJ92_RS05165 (EQJ92_05165) - 1069424..1070098 (-) 675 WP_128688458.1 putative HNHc nuclease -
  EQJ92_RS05170 (EQJ92_05170) ssb 1070110..1070535 (-) 426 WP_128688459.1 single-stranded DNA-binding protein Machinery gene
  EQJ92_RS05175 (EQJ92_05175) - 1070528..1070734 (-) 207 WP_128688460.1 hypothetical protein -
  EQJ92_RS05180 (EQJ92_05180) - 1070727..1071452 (-) 726 WP_128688461.1 ERF family protein -
  EQJ92_RS05185 (EQJ92_05185) - 1071453..1071911 (-) 459 WP_241650804.1 chromosome segregation protein SMC -
  EQJ92_RS05190 (EQJ92_05190) - 1072064..1072378 (-) 315 WP_128688462.1 hypothetical protein -
  EQJ92_RS05195 (EQJ92_05195) - 1072478..1072807 (-) 330 WP_128688463.1 DUF771 domain-containing protein -
  EQJ92_RS05200 (EQJ92_05200) - 1072821..1073546 (-) 726 WP_128688464.1 Rha family transcriptional regulator -
  EQJ92_RS05205 (EQJ92_05205) - 1073606..1073914 (+) 309 WP_058120778.1 hypothetical protein -
  EQJ92_RS05210 (EQJ92_05210) - 1073904..1074110 (-) 207 WP_128688465.1 hypothetical protein -
  EQJ92_RS05215 (EQJ92_05215) - 1074154..1074939 (-) 786 WP_128688466.1 phage antirepressor -
  EQJ92_RS05220 (EQJ92_05220) - 1074955..1075143 (-) 189 WP_128688467.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15653.42 Da        Isoelectric Point: 7.9972

>NTDB_id=334883 EQJ92_RS05170 WP_128688459.1 1070110..1070535(-) (ssb) [Pediococcus acidilactici strain SRCM103367]
MINRTILIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAENFAKYTQKGSLVGIEGRIQTR
SYENQQGQRVYVTEIVADNFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDIGDDQLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=334883 EQJ92_RS05170 WP_128688459.1 1070110..1070535(-) (ssb) [Pediococcus acidilactici strain SRCM103367]
ATGATTAATCGAACAATACTAATAGGACGTTTAACTAAAGATGTTGAGCTTCGCCACACAGCTAAAGGCGATGCGGTAGC
TAGTTTTACCGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGTGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAGGCAGCAGAAAACTTTGCTAAGTATACACAAAAAGGTTCGTTGGTAGGTATTGAAGGGCGGATTCAGACCCGT
TCGTACGAAAACCAACAAGGGCAACGAGTATACGTTACCGAAATTGTGGCGGATAACTTCTCACTGCTAGATTCGAAACC
AAAAGGCAACCAGCAAAATAATGCACGGCAAGCATCAACGCCGGGAGATCCATTCGCTAATGGCGGACAGTCAATCGATA
TTGGTGACGACCAGCTCCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.688
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.326

100

0.638
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.111

76.596

0.468
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.254

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

41.549

100

0.418
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.549

100

0.418
  ssbB/cilA Streptococcus pneumoniae Rx1

40.845

100

0.411
  ssbB/cilA Streptococcus pneumoniae D39

40.845

100

0.411
  ssbB/cilA Streptococcus pneumoniae R6

40.845

100

0.411
  ssbB/cilA Streptococcus mitis SK321

40.845

100

0.411
  ssbA Streptococcus mutans UA159

37.324

100

0.376

Multiple sequence alignment