Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EMO93_RS01950 Genome accession   NZ_CP035003
Coordinates   423728..423994 (-) Length   88 a.a.
NCBI ID   WP_000927911.1    Uniprot ID   A0A2S6DDE2
Organism   Staphylococcus aureus strain PCFA-221     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418728..428994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMO93_RS01915 gcvPA 419230..420576 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EMO93_RS01920 gcvT 420596..421687 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  EMO93_RS01925 - 421846..422370 (-) 525 WP_001015120.1 shikimate kinase -
  EMO93_RS01930 - 422360..422506 (-) 147 WP_001789879.1 hypothetical protein -
  EMO93_RS01935 comGF 422603..423100 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  EMO93_RS01940 comGE 423018..423317 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  EMO93_RS01945 comGD 423304..423750 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  EMO93_RS01950 comGC 423728..423994 (-) 267 WP_000927911.1 competence type IV pilus major pilin ComGC Machinery gene
  EMO93_RS01955 comGB 424052..425122 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  EMO93_RS01960 comGA 425094..426068 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  EMO93_RS01965 - 426120..426743 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  EMO93_RS01970 - 426740..427069 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  EMO93_RS01975 - 427069..428055 (-) 987 WP_000161315.1 ROK family glucokinase -
  EMO93_RS01980 - 428052..428255 (-) 204 WP_000087559.1 YqgQ family protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9488.10 Da        Isoelectric Point: 7.1319

>NTDB_id=333876 EMO93_RS01950 WP_000927911.1 423728..423994(-) (comGC) [Staphylococcus aureus strain PCFA-221]
MLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFIKEAQKTCKSGETITI
SNGEAVAN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=333876 EMO93_RS01950 WP_000927911.1 423728..423994(-) (comGC) [Staphylococcus aureus strain PCFA-221]
ATGCTATTAGTATTATTAATCATCAGTTTATTATTAATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACA
ATCAACAGGTTGTAATGCACAGGTAAAAATGGTTAATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCAT
CGTCTATTGAAGACTTAATTGCAGATGGTTTTATAAAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATT
AGTAATGGAGAAGCAGTTGCAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DDE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

100

100

1
  comGC Staphylococcus aureus N315

100

100

1
  comYC Streptococcus gordonii str. Challis substr. CH1

41.573

100

0.42
  comGC/cglC Streptococcus pneumoniae TIGR4

43.529

96.591

0.42
  comGC/cglC Streptococcus mitis NCTC 12261

49.275

78.409

0.386
  comYC Streptococcus suis isolate S10

49.275

78.409

0.386
  comGC/cglC Streptococcus mitis SK321

49.275

78.409

0.386
  comGC/cglC Streptococcus pneumoniae Rx1

47.826

78.409

0.375
  comGC/cglC Streptococcus pneumoniae D39

47.826

78.409

0.375
  comGC/cglC Streptococcus pneumoniae R6

47.826

78.409

0.375

Multiple sequence alignment