Detailed information NTG0333874

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: FWK61_RS08325
• Genome accession: NZ_CP042992
• Coordinates: 1824749..1825363 (-)
• Length: 204 a.a.
• NCBI ID: WP_075293664.1
• Uniprot ID: A0A9Q6Z0E0
• Organism: Histophilus somni strain UOC-KLM-ATR-013
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1819749..1830363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK61_RS08305 (FWK61_08305)	putP	1819927..1821441 (+)	1515	WP_132995098.1	sodium/proline symporter PutP	-
FWK61_RS08310 (FWK61_08310)	cmoB	1821444..1822409 (+)	966	WP_012340593.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
FWK61_RS08315 (FWK61_08315)	-	1822409..1823617 (+)	1209	WP_012340582.1	NAD(P)/FAD-dependent oxidoreductase	-
FWK61_RS08320 (FWK61_08320)	ruvB	1823731..1824738 (-)	1008	WP_011608424.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
FWK61_RS08325 (FWK61_08325)	ruvA	1824749..1825363 (-)	615	WP_075293664.1	Holliday junction branch migration protein RuvA	Machinery gene
FWK61_RS08330 (FWK61_08330)	recC	1825442..1828876 (-)	3435	WP_132995096.1	exodeoxyribonuclease V subunit gamma	-
FWK61_RS08335 (FWK61_08335)	comQ	1828929..1829246 (-)	318	WP_012340547.1	DUF5374 domain-containing protein	Machinery gene
FWK61_RS08340 (FWK61_08340)	comP	1829227..1829907 (-)	681	WP_132995094.1	DUF2572 family protein	Machinery gene

Sequence

Protein

• Length: 204 a.a.
• Molecular weight: 22621.59 Da
• Isoelectric Point: 8.0493

>NTDB_id=333874 FWK61_RS08325 WP_075293664.1 1824749..1825363(-) (ruvA) [Histophilus somni strain UOC-KLM-ATR-013]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKPDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide

• Length: 615 bp

>NTDB_id=333874 FWK61_RS08325 WP_075293664.1 1824749..1825363(-) (ruvA) [Histophilus somni strain UOC-KLM-ATR-013]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTAGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACCGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (161-202)

• RuvA N terminal domain (RuvA_N) (1-62)

• Helix-hairpin-helix domain (HHH_5) (72-129)

3D structure

• AlphaFold DB: A0A9Q6Z0E0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	37.321	100	0.382
ruvA	Streptococcus pneumoniae TIGR4	36.765	100	0.368
ruvA	Streptococcus pneumoniae R6	36.765	100	0.368
ruvA	Streptococcus pneumoniae D39	36.765	100	0.368