Detailed information NTG0332124

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NX80_RS04200
• Genome accession: NZ_CP034653
• Coordinates: 937677..938933 (-)
• Length: 418 a.a.
• NCBI ID: WP_026113135.1
• Uniprot ID: -
• Organism: Xanthomonas vasicola pv. arecae strain NCPPB 2649
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 932677..943933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NX80_RS23105	-	935520..935786 (-)	267	WP_193588613.1	hypothetical protein	-
NX80_RS04190 (NX80_004190)	coaE	936182..936793 (-)	612	WP_017117847.1	dephospho-CoA kinase	-
NX80_RS04195 (NX80_004195)	-	936807..937670 (-)	864	WP_017117848.1	A24 family peptidase	-
NX80_RS04200 (NX80_004200)	pilC	937677..938933 (-)	1257	WP_026113135.1	type II secretion system F family protein	Machinery gene
NX80_RS04205 (NX80_004205)	pilA/pilAI	939297..939713 (+)	417	WP_010375211.1	pilin	Machinery gene
NX80_RS04210 (NX80_004210)	-	939720..940220 (+)	501	WP_322788741.1	pilin	-
NX80_RS04215 (NX80_004215)	pilB	940285..942018 (+)	1734	WP_047699621.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45573.85 Da
• Isoelectric Point: 10.3457

>NTDB_id=332124 NX80_RS04200 WP_026113135.1 937677..938933(-) (pilC) [Xanthomonas vasicola pv. arecae strain NCPPB 2649]
MAAVRSVVRSKPASQAEQMSTFVWEGTDKRGVKMKGEQTSKNANLLRAELRRQGITPTVVKAKPKPLFGAAGKKISPKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAVSKHPVQFDELYRNLIRAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPSMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLI
LFVVIGAVVGFIFAYKRSPAMQHGMDRLILRVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEKA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=332124 NX80_RS04200 WP_026113135.1 937677..938933(-) (pilC) [Xanthomonas vasicola pv. arecae strain NCPPB 2649]
ATGGCAGCAGTGCGTAGCGTAGTCAGGAGCAAGCCGGCCTCACAGGCCGAACAGATGAGCACGTTTGTCTGGGAGGGGAC
GGACAAGCGCGGCGTAAAGATGAAGGGTGAGCAGACCTCCAAGAACGCAAATTTGCTACGAGCGGAATTGCGACGCCAGG
GGATCACGCCGACCGTAGTGAAGGCGAAACCTAAGCCGCTGTTTGGTGCTGCGGGAAAGAAGATCTCCCCGAAGGACATT
TCTTTCTTCAGCCGGCAAATGGCAACAATGATGAAATCCGGTGTGCCCATCGTAGGTGCACTGGAAATCATTGGCAGTGG
CCAGAAAAATCCGCGCATGCGCAACATGGTCGGCCAAGTCCGCACCGATATTGAGGGAGGCTCATCGCTGCACGAAGCAG
TAAGCAAGCATCCGGTTCAGTTCGACGAGTTGTACAGAAATTTGATCAGAGCAGGCGAAGGCGCAGGCGTGCTCGAAACG
GTACTCGACACCATTGCAAGTTATAAGGAAAACATCGAAGCGCTGAAAGGCAAAATCAAGAAGGCCTTGTTTTACCCATC
GATGGTCGTCGCTGTAGCGTTACTAGTCAGTGCGATCTTGTTGATCTTTGTTGTTCCTCAATTCGAAGATGTCTTCAAAG
GCTTTGGTGCAGAACTACCGGCGTTCACACAGATGATCGTCAACCTGTCGAGGTTCATGGTGTCGTGGTGGTGGCTGATC
TTGTTCGTCGTGATCGGCGCAGTCGTTGGCTTCATCTTTGCCTACAAACGGTCGCCGGCTATGCAGCACGGCATGGATCG
ACTGATTCTTAGGGTACCGATCATCGGGCAAATCATGCATAACAGCTCGATTGCACGTTTTGCGCGAACCACCGCAGTGA
CGTTCAAGGCCGGCGTACCATTGGTTGAAGCACTCAGCATTGTTGCCGGTGCCACAGGCAATTCGGTTTACGAGAAAGCA
GTGCTGCGGATGCGCGATGATGTCTCTGTTGGCTATCCAGTCAACGTGGCAATGAAGCAGGTCAACCTGTTCCCTCACAT
GGTCGTACAGATGACCGCAATCGGCGAAGAAGCGGGCGCTTTGGATGCCATGCTGTTCAAGGTGGCAGAGTACTTCGAGC
AAGAGGTCAACAACGCTGTCGACGCGCTTAGCAGCCTGATCGAGCCCCTTATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	52.84	96.89	0.512
pilC	Acinetobacter baylyi ADP1	50.739	97.129	0.493
pilC	Legionella pneumophila strain ERS1305867	51.637	94.976	0.49
pilC	Acinetobacter baumannii D1279779	49.752	96.651	0.481
pilG	Neisseria gonorrhoeae MS11	43.103	97.129	0.419
pilG	Neisseria meningitidis 44/76-A	42.611	97.129	0.414
pilC	Vibrio cholerae strain A1552	40.394	97.129	0.392
pilC	Vibrio campbellii strain DS40M4	39.95	96.411	0.385
pilC	Thermus thermophilus HB27	37.656	95.933	0.361