Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   EJF26_RS05225 Genome accession   NZ_CP034442
Coordinates   1038448..1038843 (-) Length   131 a.a.
NCBI ID   WP_000282455.1    Uniprot ID   A0A3R9LYT8
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1033448..1043843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS05200 recX 1034021..1034797 (+) 777 WP_000705059.1 recombination regulator RecX -
  EJF26_RS05205 - 1034886..1035419 (+) 534 WP_000775318.1 DUF402 domain-containing protein -
  EJF26_RS05210 - 1035490..1036257 (-) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  EJF26_RS05215 groL 1036369..1037991 (-) 1623 WP_000031549.1 chaperonin GroEL -
  EJF26_RS05220 groES 1038007..1038291 (-) 285 WP_000917329.1 co-chaperone GroES -
  EJF26_RS05225 ssbB/cilA 1038448..1038843 (-) 396 WP_000282455.1 single-stranded DNA-binding protein Machinery gene
  EJF26_RS05230 - 1038920..1039681 (-) 762 WP_001107797.1 SDR family NAD(P)-dependent oxidoreductase -
  EJF26_RS05235 ytpR 1039723..1040349 (-) 627 WP_000578277.1 YtpR family tRNA-binding protein -
  EJF26_RS05240 - 1040365..1040682 (-) 318 WP_000632375.1 thioredoxin family protein -
  EJF26_RS05245 - 1040679..1040978 (-) 300 WP_008277325.1 DUF4651 domain-containing protein -
  EJF26_RS05250 - 1041072..1042343 (-) 1272 WP_000791634.1 N-acetylmuramoyl-L-alanine amidase family protein -
  EJF26_RS05255 - 1042392..1043099 (-) 708 WP_000393602.1 B3/4 domain-containing protein -
  EJF26_RS05260 rpoE 1043238..1043828 (-) 591 WP_000418414.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14857.80 Da        Isoelectric Point: 5.9409

>NTDB_id=331348 EJF26_RS05225 WP_000282455.1 1038448..1038843(-) (ssbB/cilA) [Streptococcus oralis subsp. dentisani strain F0392]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFINLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQINYVTEVLVTGFQLLESRAQRALRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=331348 EJF26_RS05225 WP_000282455.1 1038448..1038843(-) (ssbB/cilA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGTATAATAAAGTTATCATGATTGGGCGTTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTGGC
TCGCGCAACGATTGCTGTGAACCGTCGTTACAAAGACCAAAATGGAGAACGCGAAGCCGACTTTATCAATCTCGTTCTTT
GGGGAAAATTGGCTGAAACCTTGGCAAGTTATGCAACTAAAGGTAGCCTCATTTCTGTTGATGGGGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGGCAGATCAACTATGTGACCGAAGTTCTCGTGACAGGTTTCCAACTCTTGGAAAGCCGCGCCCA
ACGTGCCTTGCGTGAAAATAACGCAGGTCAAGACTTGGCAGATTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9LYT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

96.183

100

0.962
  ssbB/cilA Streptococcus pneumoniae Rx1

96.183

100

0.962
  ssbB/cilA Streptococcus pneumoniae D39

96.183

100

0.962
  ssbB/cilA Streptococcus pneumoniae R6

96.183

100

0.962
  ssbB/cilA Streptococcus pneumoniae TIGR4

95.42

100

0.954
  ssbB/cilA Streptococcus mitis SK321

94.656

100

0.947
  ssbA Streptococcus mutans UA159

72.519

100

0.725
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

48.673

86.26

0.42
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412

Multiple sequence alignment