Detailed information NTG0330230

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EIM92_RS04795
• Genome accession: NZ_CP034248
• Coordinates: 1044283..1044765 (+)
• Length: 160 a.a.
• NCBI ID: WP_110930603.1
• Uniprot ID: -
• Organism: Paenibacillus lentus strain DSM 25539
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1039283..1049765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EIM92_RS04750 (EIM92_04750)	-	1039531..1040031 (+)	501	WP_125081700.1	DUF4446 family protein	-
EIM92_RS04755 (EIM92_04755)	yyaC	1040003..1040611 (-)	609	WP_125081701.1	spore protease YyaC	-
EIM92_RS04760 (EIM92_04760)	-	1040757..1041008 (+)	252	WP_125081702.1	DUF3343 domain-containing protein	-
EIM92_RS04765 (EIM92_04765)	-	1041019..1041918 (+)	900	WP_246021201.1	mechanosensitive ion channel family protein	-
EIM92_RS04770 (EIM92_04770)	-	1042009..1042239 (+)	231	WP_125081703.1	DUF951 domain-containing protein	-
EIM92_RS04780 (EIM92_04780)	-	1042724..1042909 (+)	186	WP_125081704.1	hypothetical protein	-
EIM92_RS04785 (EIM92_04785)	-	1043516..1043713 (-)	198	WP_125081705.1	YjzC family protein	-
EIM92_RS04790 (EIM92_04790)	rpsF	1043916..1044200 (+)	285	WP_125081706.1	30S ribosomal protein S6	-
EIM92_RS04795 (EIM92_04795)	ssbA	1044283..1044765 (+)	483	WP_110930603.1	single-stranded DNA-binding protein	Machinery gene
EIM92_RS04800 (EIM92_04800)	rpsR	1044786..1045055 (+)	270	WP_018750422.1	30S ribosomal protein S18	-
EIM92_RS04805 (EIM92_04805)	-	1045417..1046433 (+)	1017	WP_125081707.1	ABC transporter ATP-binding protein	-
EIM92_RS04810 (EIM92_04810)	-	1046438..1047373 (+)	936	WP_125081708.1	ATP-binding cassette domain-containing protein	-
EIM92_RS04815 (EIM92_04815)	opp4B	1047379..1048341 (+)	963	WP_125081709.1	oligopeptide ABC transporter permease	-
EIM92_RS04820 (EIM92_04820)	-	1048367..1049275 (+)	909	WP_125081710.1	ABC transporter permease	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17732.49 Da
• Isoelectric Point: 4.8453

>NTDB_id=330230 EIM92_RS04795 WP_110930603.1 1044283..1044765(+) (ssbA) [Paenibacillus lentus strain DSM 25539]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTIAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNREGGSGGGQREENPFGGSSAGGNSNRSSNFSRSNQDPFSDDGKPIDISDDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=330230 EIM92_RS04795 WP_110930603.1 1044283..1044765(+) (ssbA) [Paenibacillus lentus strain DSM 25539]
TTGTTGAACCGTGTCATTCTGATCGGACGTCTAACTAGAGACCCCGAGCTGCGTTATACGCCATCTGGCGTAGCGGTTAC
TCAGTTCACGATTGCCGTGGACAGACCGTTCACATCGCAGGGAGGAGAACGCGAAGCGGATTTTATTCCGGTCGTAACTT
GGAGACAACTGGCTGAGACGTGCGCGAATTACTTACGTAAGGGTCGACTCACAGCGGTTGAGGGACGCATTCAGGTACGG
AATTACGAGAATAACGAAGGCAAACGTGTATACGTAACCGAAGTCATTGCTGATAATGTCCGTTTCTTGGAGTCTAATCG
TGAAGGTGGCAGTGGTGGTGGACAGCGCGAGGAGAATCCATTTGGAGGAAGCAGTGCGGGTGGCAATAGCAACCGCAGCA
GCAATTTCTCACGCAGCAACCAAGATCCATTCTCTGACGATGGGAAACCGATCGATATTTCGGATGACGATTTGCCATTT
TAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.143	100	0.625
ssb	Latilactobacillus sakei subsp. sakei 23K	50.588	100	0.537
ssb	Neisseria meningitidis MC58	34.637	100	0.388
ssbB/cilA	Streptococcus pneumoniae TIGR4	45.455	82.5	0.375
ssb	Neisseria gonorrhoeae MS11	33.523	100	0.369
ssbB/cilA	Streptococcus pneumoniae D39	44.697	82.5	0.369
ssbB/cilA	Streptococcus pneumoniae R6	44.697	82.5	0.369
ssbB/cilA	Streptococcus mitis SK321	44.697	82.5	0.369
ssbB/cilA	Streptococcus pneumoniae Rx1	44.697	82.5	0.369
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.769	65	0.362
ssbB/cilA	Streptococcus mitis NCTC 12261	43.939	82.5	0.362