Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EH197_RS09820 | Genome accession | NZ_CP034169 |
| Coordinates | 1914591..1915028 (+) | Length | 145 a.a. |
| NCBI ID | WP_137439634.1 | Uniprot ID | - |
| Organism | Enterococcus avium strain 352 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1905816..1950893 | 1914591..1915028 | within | 0 |
Gene organization within MGE regions
Location: 1905816..1950893
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EH197_RS09750 (EH197_09750) | - | 1905816..1906952 (-) | 1137 | WP_137439613.1 | site-specific integrase | - |
| EH197_RS09755 (EH197_09755) | - | 1907027..1907641 (-) | 615 | WP_137439615.1 | DUF4352 domain-containing protein | - |
| EH197_RS09760 (EH197_09760) | - | 1907656..1908294 (-) | 639 | WP_137439617.1 | XRE family transcriptional regulator | - |
| EH197_RS09765 (EH197_09765) | - | 1908450..1908680 (+) | 231 | WP_137439619.1 | helix-turn-helix transcriptional regulator | - |
| EH197_RS09770 (EH197_09770) | - | 1908854..1909099 (+) | 246 | WP_137439620.1 | hypothetical protein | - |
| EH197_RS09775 (EH197_09775) | - | 1909113..1909811 (+) | 699 | WP_137439622.1 | Rha family transcriptional regulator | - |
| EH197_RS09780 (EH197_09780) | - | 1909822..1910013 (+) | 192 | WP_137439623.1 | hypothetical protein | - |
| EH197_RS09785 (EH197_09785) | - | 1910046..1910516 (-) | 471 | WP_137440460.1 | hypothetical protein | - |
| EH197_RS24460 | - | 1910606..1910752 (+) | 147 | WP_167494433.1 | hypothetical protein | - |
| EH197_RS09790 (EH197_09790) | - | 1910788..1911015 (+) | 228 | WP_137439625.1 | hypothetical protein | - |
| EH197_RS09795 (EH197_09795) | - | 1911028..1911564 (+) | 537 | WP_137439627.1 | host-nuclease inhibitor Gam family protein | - |
| EH197_RS09800 (EH197_09800) | - | 1911566..1912564 (+) | 999 | WP_137439629.1 | AAA family ATPase | - |
| EH197_RS09805 (EH197_09805) | - | 1912570..1913238 (+) | 669 | WP_137439631.1 | putative HNHc nuclease | - |
| EH197_RS09810 (EH197_09810) | - | 1913249..1914181 (+) | 933 | WP_225844337.1 | DnaD domain protein | - |
| EH197_RS09815 (EH197_09815) | - | 1914178..1914594 (+) | 417 | WP_137439633.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EH197_RS09820 (EH197_09820) | ssb | 1914591..1915028 (+) | 438 | WP_137439634.1 | single-stranded DNA-binding protein | Machinery gene |
| EH197_RS09825 (EH197_09825) | - | 1915039..1915527 (+) | 489 | WP_137439636.1 | hypothetical protein | - |
| EH197_RS09830 (EH197_09830) | - | 1915529..1915771 (+) | 243 | WP_048722687.1 | hypothetical protein | - |
| EH197_RS09835 (EH197_09835) | - | 1915830..1916051 (+) | 222 | WP_137439637.1 | hypothetical protein | - |
| EH197_RS24290 | - | 1916099..1916263 (+) | 165 | WP_158408725.1 | hypothetical protein | - |
| EH197_RS09840 (EH197_09840) | - | 1916331..1916546 (+) | 216 | WP_158408726.1 | DUF1642 domain-containing protein | - |
| EH197_RS24295 | - | 1916565..1916732 (+) | 168 | WP_158408727.1 | hypothetical protein | - |
| EH197_RS09845 (EH197_09845) | - | 1916765..1917073 (+) | 309 | WP_137439641.1 | hypothetical protein | - |
| EH197_RS09850 (EH197_09850) | - | 1917110..1917346 (+) | 237 | WP_070558084.1 | hypothetical protein | - |
| EH197_RS24300 | - | 1917358..1917525 (+) | 168 | WP_158408728.1 | hypothetical protein | - |
| EH197_RS09855 (EH197_09855) | - | 1917522..1917833 (+) | 312 | WP_102865907.1 | replicase | - |
| EH197_RS24305 | - | 1917830..1917985 (+) | 156 | WP_158408729.1 | hypothetical protein | - |
| EH197_RS09860 (EH197_09860) | - | 1918026..1918208 (+) | 183 | WP_070504224.1 | hypothetical protein | - |
| EH197_RS09865 (EH197_09865) | - | 1918239..1919189 (+) | 951 | WP_070509400.1 | site-specific integrase | - |
| EH197_RS09870 (EH197_09870) | - | 1919204..1919731 (+) | 528 | WP_028020911.1 | hypothetical protein | - |
| EH197_RS09875 (EH197_09875) | - | 1919706..1920299 (+) | 594 | WP_028020912.1 | N-6 DNA methylase | - |
| EH197_RS09880 (EH197_09880) | - | 1920332..1920919 (+) | 588 | WP_137439643.1 | DUF1642 domain-containing protein | - |
| EH197_RS09885 (EH197_09885) | - | 1920928..1921317 (+) | 390 | WP_137439645.1 | hypothetical protein | - |
| EH197_RS09890 (EH197_09890) | - | 1921314..1921577 (+) | 264 | WP_137439647.1 | hypothetical protein | - |
| EH197_RS09895 (EH197_09895) | - | 1921574..1921753 (+) | 180 | WP_070621694.1 | hypothetical protein | - |
| EH197_RS09900 (EH197_09900) | - | 1922011..1922400 (+) | 390 | WP_137439649.1 | YopX family protein | - |
| EH197_RS09905 (EH197_09905) | - | 1922401..1922706 (+) | 306 | WP_048719862.1 | hypothetical protein | - |
| EH197_RS09910 (EH197_09910) | - | 1922838..1923287 (+) | 450 | WP_158408730.1 | hypothetical protein | - |
| EH197_RS24310 | - | 1923892..1924059 (+) | 168 | WP_158408731.1 | hypothetical protein | - |
| EH197_RS09920 (EH197_09920) | - | 1924146..1924304 (+) | 159 | WP_010743339.1 | hypothetical protein | - |
| EH197_RS24465 | - | 1924455..1924631 (+) | 177 | WP_167494434.1 | hypothetical protein | - |
| EH197_RS09925 (EH197_09925) | - | 1924637..1924840 (+) | 204 | WP_137439655.1 | hypothetical protein | - |
| EH197_RS09930 (EH197_09930) | - | 1924837..1925025 (+) | 189 | WP_137439656.1 | hypothetical protein | - |
| EH197_RS09935 (EH197_09935) | - | 1925025..1925591 (+) | 567 | WP_244299452.1 | hypothetical protein | - |
| EH197_RS09940 (EH197_09940) | - | 1925584..1925895 (+) | 312 | WP_137439658.1 | HNH endonuclease | - |
| EH197_RS09945 (EH197_09945) | - | 1925889..1926191 (+) | 303 | WP_244299454.1 | hypothetical protein | - |
| EH197_RS09950 (EH197_09950) | - | 1926315..1926674 (+) | 360 | WP_137439660.1 | hypothetical protein | - |
| EH197_RS09955 (EH197_09955) | - | 1926671..1928314 (+) | 1644 | WP_137439661.1 | terminase TerL endonuclease subunit | - |
| EH197_RS09960 (EH197_09960) | - | 1928340..1929494 (+) | 1155 | WP_137439663.1 | phage portal protein | - |
| EH197_RS09965 (EH197_09965) | - | 1929475..1930182 (+) | 708 | WP_010722457.1 | head maturation protease, ClpP-related | - |
| EH197_RS09970 (EH197_09970) | - | 1930209..1931345 (+) | 1137 | WP_137439665.1 | phage major capsid protein | - |
| EH197_RS24470 | - | 1931353..1931496 (+) | 144 | WP_002342053.1 | hypothetical protein | - |
| EH197_RS09975 (EH197_09975) | - | 1931509..1931796 (+) | 288 | WP_137439666.1 | head-tail connector protein | - |
| EH197_RS09980 (EH197_09980) | - | 1931777..1932157 (+) | 381 | WP_104771611.1 | phage head-tail adapter protein | - |
| EH197_RS09985 (EH197_09985) | - | 1932150..1932554 (+) | 405 | WP_137439667.1 | hypothetical protein | - |
| EH197_RS09990 (EH197_09990) | - | 1932551..1932961 (+) | 411 | WP_137439668.1 | hypothetical protein | - |
| EH197_RS09995 (EH197_09995) | - | 1933026..1933622 (+) | 597 | WP_137439669.1 | major tail protein | - |
| EH197_RS10000 (EH197_10000) | - | 1933683..1933994 (+) | 312 | WP_137439670.1 | hypothetical protein | - |
| EH197_RS10005 (EH197_10005) | - | 1934189..1940401 (+) | 6213 | WP_137439671.1 | phage tail tape measure protein | - |
| EH197_RS10010 (EH197_10010) | - | 1940402..1941223 (+) | 822 | WP_137439672.1 | phage tail domain-containing protein | - |
| EH197_RS10015 (EH197_10015) | - | 1941232..1942257 (+) | 1026 | WP_137439673.1 | phage tail protein | - |
| EH197_RS10020 (EH197_10020) | - | 1942257..1943306 (+) | 1050 | WP_137439674.1 | hypothetical protein | - |
| EH197_RS24795 | - | 1943307..1945976 (+) | 2670 | WP_244299456.1 | BppU family phage baseplate upper protein | - |
| EH197_RS10035 (EH197_10035) | - | 1945987..1946337 (+) | 351 | WP_137439675.1 | hypothetical protein | - |
| EH197_RS25040 | - | 1946338..1946451 (+) | 114 | WP_010746267.1 | CD1375 family protein | - |
| EH197_RS25045 | - | 1946489..1946614 (+) | 126 | WP_010746268.1 | CD1375 family protein | - |
| EH197_RS10040 (EH197_10040) | - | 1946670..1946912 (+) | 243 | WP_016180074.1 | hemolysin XhlA family protein | - |
| EH197_RS10045 (EH197_10045) | - | 1946924..1947121 (+) | 198 | WP_010746270.1 | phage holin | - |
| EH197_RS10050 (EH197_10050) | - | 1947132..1948241 (+) | 1110 | WP_137439676.1 | GH25 family lysozyme | - |
| EH197_RS10055 (EH197_10055) | - | 1948288..1948542 (-) | 255 | WP_070621288.1 | hypothetical protein | - |
| EH197_RS10065 (EH197_10065) | - | 1948723..1949121 (-) | 399 | WP_137439677.1 | hypothetical protein | - |
| EH197_RS10070 (EH197_10070) | - | 1949518..1950387 (+) | 870 | WP_048720345.1 | SPFH domain-containing protein | - |
| EH197_RS10075 (EH197_10075) | - | 1950399..1950893 (+) | 495 | WP_048720343.1 | LURP-one-related family protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16111.78 Da Isoelectric Point: 5.2262
>NTDB_id=329520 EH197_RS09820 WP_137439634.1 1914591..1915028(+) (ssb) [Enterococcus avium strain 352]
MINNVVLVGRLTKDPDLRYTASGTGVATFTLAVNRNFTNQDGNRDADFINCVIWRKSAETLANYAKKGTLLGVIGRIQTR
SYENQQGQRVYVTEVVAENFQLLESRSTNENRQENKRPKSTDTTNASSDPFSGSSIDIGDDDLPF
MINNVVLVGRLTKDPDLRYTASGTGVATFTLAVNRNFTNQDGNRDADFINCVIWRKSAETLANYAKKGTLLGVIGRIQTR
SYENQQGQRVYVTEVVAENFQLLESRSTNENRQENKRPKSTDTTNASSDPFSGSSIDIGDDDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=329520 EH197_RS09820 WP_137439634.1 1914591..1915028(+) (ssb) [Enterococcus avium strain 352]
ATGATCAACAATGTGGTTTTAGTCGGGAGATTAACAAAAGATCCTGACTTACGATACACAGCGAGTGGCACGGGAGTAGC
AACATTCACTCTTGCAGTGAACAGAAACTTTACCAATCAAGATGGTAACAGAGATGCAGACTTTATTAACTGCGTAATTT
GGCGGAAGTCAGCAGAGACGTTAGCCAATTATGCTAAAAAAGGAACGCTGTTAGGTGTGATTGGCCGCATTCAAACAAGA
AGCTATGAAAATCAGCAAGGACAACGTGTCTATGTAACCGAAGTAGTTGCTGAGAACTTCCAATTGCTTGAATCACGTAG
TACTAATGAGAATCGGCAAGAGAATAAGAGGCCAAAGAGTACCGATACAACAAATGCAAGTTCTGATCCTTTTAGTGGTT
CATCGATTGACATCGGCGACGATGACTTGCCGTTTTAG
ATGATCAACAATGTGGTTTTAGTCGGGAGATTAACAAAAGATCCTGACTTACGATACACAGCGAGTGGCACGGGAGTAGC
AACATTCACTCTTGCAGTGAACAGAAACTTTACCAATCAAGATGGTAACAGAGATGCAGACTTTATTAACTGCGTAATTT
GGCGGAAGTCAGCAGAGACGTTAGCCAATTATGCTAAAAAAGGAACGCTGTTAGGTGTGATTGGCCGCATTCAAACAAGA
AGCTATGAAAATCAGCAAGGACAACGTGTCTATGTAACCGAAGTAGTTGCTGAGAACTTCCAATTGCTTGAATCACGTAG
TACTAATGAGAATCGGCAAGAGAATAAGAGGCCAAAGAGTACCGATACAACAAATGCAAGTTCTGATCCTTTTAGTGGTT
CATCGATTGACATCGGCGACGATGACTTGCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.824 |
100 |
0.69 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.598 |
100 |
0.655 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.828 |
100 |
0.448 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
73.103 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.759 |
100 |
0.428 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.759 |
100 |
0.428 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.759 |
100 |
0.428 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.759 |
100 |
0.428 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
50.435 |
79.31 |
0.4 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
49.565 |
79.31 |
0.393 |
| ssbA | Streptococcus mutans UA159 |
46.087 |
79.31 |
0.366 |