Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | EHN06_RS13950 | Genome accession | NZ_CP034142 |
| Coordinates | 3070443..3071660 (+) | Length | 405 a.a. |
| NCBI ID | WP_127333150.1 | Uniprot ID | A0A3Q9NJ82 |
| Organism | Marinobacter sp. NP-4(2019) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3065443..3076660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHN06_RS13935 (EHN06_13935) | - | 3066123..3067826 (-) | 1704 | WP_127333148.1 | hypothetical protein | - |
| EHN06_RS13940 (EHN06_13940) | pilA | 3067873..3068331 (-) | 459 | WP_206075664.1 | pilin | Machinery gene |
| EHN06_RS13945 (EHN06_13945) | pilB | 3068725..3070440 (+) | 1716 | WP_127333149.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EHN06_RS13950 (EHN06_13950) | pilC | 3070443..3071660 (+) | 1218 | WP_127333150.1 | type II secretion system F family protein | Machinery gene |
| EHN06_RS13955 (EHN06_13955) | pilD | 3071791..3072666 (+) | 876 | WP_127333151.1 | prepilin peptidase | Machinery gene |
| EHN06_RS13960 (EHN06_13960) | coaE | 3072666..3073265 (+) | 600 | WP_127333152.1 | dephospho-CoA kinase | - |
| EHN06_RS13965 (EHN06_13965) | - | 3073258..3074337 (+) | 1080 | WP_228257310.1 | hypothetical protein | - |
| EHN06_RS13970 (EHN06_13970) | tsaA | 3074334..3075065 (+) | 732 | WP_127333153.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44339.20 Da Isoelectric Point: 9.0772
>NTDB_id=329334 EHN06_RS13950 WP_127333150.1 3070443..3071660(+) (pilC) [Marinobacter sp. NP-4(2019)]
MAEKAQKLQAFVWEGKDRKGNKTKGEVSGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMFTRQMATMMK
AGVPLVQSFDIVTDGLENQGLKELVGAIRNDVASGTSFAGALRRHPKHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFEGFGADLPVFTQFIINISEWMQQWWFIVLLGIVGFIFLFK
EAIRRSQRFSDLVDKYLLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALESVSGATGNAVYRDAVTKIKDEVSSGT
QLQAAMRATGVFPVMAVQLTAIGEESGNLDEMLEKVADHYESVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVV
MAEKAQKLQAFVWEGKDRKGNKTKGEVSGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMFTRQMATMMK
AGVPLVQSFDIVTDGLENQGLKELVGAIRNDVASGTSFAGALRRHPKHFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFEGFGADLPVFTQFIINISEWMQQWWFIVLLGIVGFIFLFK
EAIRRSQRFSDLVDKYLLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALESVSGATGNAVYRDAVTKIKDEVSSGT
QLQAAMRATGVFPVMAVQLTAIGEESGNLDEMLEKVADHYESVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=329334 EHN06_RS13950 WP_127333150.1 3070443..3071660(+) (pilC) [Marinobacter sp. NP-4(2019)]
ATGGCAGAAAAAGCACAAAAGCTTCAGGCATTTGTCTGGGAAGGCAAAGACCGTAAAGGCAATAAAACCAAGGGGGAAGT
CTCCGGTTCGAATCTGGCACTGGTGAAAGCCCAGTTGCGCAAGCAGGGCATCATCCCGGACAAGGTCAAGAAGAAGCCCA
AGCCCCTGTTCGGCGGCAGCAAGAAAATTACGCCCTTTGATATCGCCATGTTCACCCGCCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGGTTCAGAGTTTCGATATTGTGACGGACGGGCTGGAAAACCAGGGGTTGAAGGAACTGGTTGGAGC
CATCCGGAATGACGTTGCCTCGGGTACCAGCTTTGCCGGTGCCCTGCGCAGGCATCCCAAGCATTTTGATGACCTTTACT
GCAACCTGGTGGACTCGGGTGAGAAAGCCGGTGCGCTTGAGCAGATGCTTGATCGCATCGCAACGTATCTTGAGAAAACT
GAAATATTGAAGAAGAAAGTCAAAAAAGCGATGACCTACCCGATTGCGGTAATTGTCGTTGCAATCGTTGTGACCGCCAT
TCTTCTTGTCAAAGTGGTACCTCAGTTCGAAAGTCTCTTCGAAGGCTTCGGCGCGGACCTTCCGGTCTTTACACAATTCA
TCATCAACATCTCGGAGTGGATGCAGCAATGGTGGTTTATTGTACTTCTGGGGATTGTTGGTTTTATCTTCCTGTTCAAG
GAGGCTATAAGGCGATCTCAGAGGTTCTCAGATCTGGTTGATAAATATCTACTCAAACTACCTATAGTTGGCGAAATTCT
GGATAAGTCCGCGGTGGCAAAGTTTGGCCGGGTACTCTCGACTACCTTCGCTGCGGGCGTTCCCCTAGTTGATGCGCTTG
AATCGGTTTCCGGTGCTACAGGCAATGCCGTTTATCGGGACGCGGTGACCAAGATCAAAGATGAGGTTTCCAGCGGCACC
CAGCTGCAAGCAGCGATGAGGGCGACCGGTGTTTTCCCTGTTATGGCCGTACAACTGACTGCCATCGGCGAGGAATCCGG
CAACCTGGATGAGATGTTGGAGAAAGTCGCAGACCACTATGAAAGCGTGGTTGATGACATGGTGGATAACCTGACGGCAC
TGATGGAGCCGATGATTATGGCAGTTCTGGGTGTTCTGGTTGGTGGTCTGATTATTGGTATGTACCTGCCGATCTTCCAG
ATGGGTCAGGTGGTGTAG
ATGGCAGAAAAAGCACAAAAGCTTCAGGCATTTGTCTGGGAAGGCAAAGACCGTAAAGGCAATAAAACCAAGGGGGAAGT
CTCCGGTTCGAATCTGGCACTGGTGAAAGCCCAGTTGCGCAAGCAGGGCATCATCCCGGACAAGGTCAAGAAGAAGCCCA
AGCCCCTGTTCGGCGGCAGCAAGAAAATTACGCCCTTTGATATCGCCATGTTCACCCGCCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGGTTCAGAGTTTCGATATTGTGACGGACGGGCTGGAAAACCAGGGGTTGAAGGAACTGGTTGGAGC
CATCCGGAATGACGTTGCCTCGGGTACCAGCTTTGCCGGTGCCCTGCGCAGGCATCCCAAGCATTTTGATGACCTTTACT
GCAACCTGGTGGACTCGGGTGAGAAAGCCGGTGCGCTTGAGCAGATGCTTGATCGCATCGCAACGTATCTTGAGAAAACT
GAAATATTGAAGAAGAAAGTCAAAAAAGCGATGACCTACCCGATTGCGGTAATTGTCGTTGCAATCGTTGTGACCGCCAT
TCTTCTTGTCAAAGTGGTACCTCAGTTCGAAAGTCTCTTCGAAGGCTTCGGCGCGGACCTTCCGGTCTTTACACAATTCA
TCATCAACATCTCGGAGTGGATGCAGCAATGGTGGTTTATTGTACTTCTGGGGATTGTTGGTTTTATCTTCCTGTTCAAG
GAGGCTATAAGGCGATCTCAGAGGTTCTCAGATCTGGTTGATAAATATCTACTCAAACTACCTATAGTTGGCGAAATTCT
GGATAAGTCCGCGGTGGCAAAGTTTGGCCGGGTACTCTCGACTACCTTCGCTGCGGGCGTTCCCCTAGTTGATGCGCTTG
AATCGGTTTCCGGTGCTACAGGCAATGCCGTTTATCGGGACGCGGTGACCAAGATCAAAGATGAGGTTTCCAGCGGCACC
CAGCTGCAAGCAGCGATGAGGGCGACCGGTGTTTTCCCTGTTATGGCCGTACAACTGACTGCCATCGGCGAGGAATCCGG
CAACCTGGATGAGATGTTGGAGAAAGTCGCAGACCACTATGAAAGCGTGGTTGATGACATGGTGGATAACCTGACGGCAC
TGATGGAGCCGATGATTATGGCAGTTCTGGGTGTTCTGGTTGGTGGTCTGATTATTGGTATGTACCTGCCGATCTTCCAG
ATGGGTCAGGTGGTGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
66.173 |
100 |
0.662 |
| pilC | Acinetobacter baylyi ADP1 |
59.113 |
100 |
0.593 |
| pilC | Acinetobacter baumannii D1279779 |
58.765 |
100 |
0.588 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.202 |
100 |
0.533 |
| pilG | Neisseria gonorrhoeae MS11 |
42.716 |
100 |
0.427 |
| pilG | Neisseria meningitidis 44/76-A |
42.469 |
100 |
0.425 |
| pilC | Vibrio campbellii strain DS40M4 |
40.64 |
100 |
0.407 |
| pilC | Vibrio cholerae strain A1552 |
39.012 |
100 |
0.39 |