Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SUB_RS00820 | Genome accession | NC_012004 |
| Coordinates | 137638..138036 (+) | Length | 132 a.a. |
| NCBI ID | WP_012657691.1 | Uniprot ID | - |
| Organism | Streptococcus uberis 0140J | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 132638..143036
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SUB_RS00810 (SUB0134) | ytpR | 132845..133471 (+) | 627 | WP_012657689.1 | YtpR family tRNA-binding protein | - |
| SUB_RS00815 (SUB0135) | - | 133665..137474 (+) | 3810 | WP_012657690.1 | GH32 C-terminal domain-containing protein | - |
| SUB_RS00820 (SUB0136) | ssbA | 137638..138036 (+) | 399 | WP_012657691.1 | single-stranded DNA-binding protein | Machinery gene |
| SUB_RS00825 (SUB0137) | - | 138527..139486 (+) | 960 | WP_012657692.1 | ABC transporter substrate-binding protein | - |
| SUB_RS00830 (SUB0138) | - | 139503..140465 (+) | 963 | WP_012657693.1 | ABC transporter substrate-binding protein | - |
| SUB_RS00835 (SUB0139) | - | 140502..141386 (+) | 885 | WP_012657694.1 | ABC transporter permease | - |
| SUB_RS00840 (SUB0140) | - | 141395..142198 (+) | 804 | WP_012657695.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 15145.29 Da Isoelectric Point: 5.9467
>NTDB_id=32909 SUB_RS00820 WP_012657691.1 137638..138036(+) (ssbA) [Streptococcus uberis 0140J]
MYNKVILIGRLVANPELITTPKNKQVCRVSVAVNRRYKNAEGERQVDFINLVLWGKLAESLASYGSKGSLISIDGELRTR
KYEKDGKTSYMTEVLGHFYQLLESRAQRAMRENNMTDDLTDLVLDEEEELPF
MYNKVILIGRLVANPELITTPKNKQVCRVSVAVNRRYKNAEGERQVDFINLVLWGKLAESLASYGSKGSLISIDGELRTR
KYEKDGKTSYMTEVLGHFYQLLESRAQRAMRENNMTDDLTDLVLDEEEELPF
Nucleotide
Download Length: 399 bp
>NTDB_id=32909 SUB_RS00820 WP_012657691.1 137638..138036(+) (ssbA) [Streptococcus uberis 0140J]
ATGTATAATAAAGTAATTTTAATAGGACGTTTAGTGGCTAATCCGGAATTGATTACCACTCCTAAAAACAAACAGGTTTG
TCGGGTTTCGGTAGCTGTCAATCGCCGTTATAAAAATGCGGAAGGGGAAAGACAAGTTGATTTCATTAATTTAGTGCTTT
GGGGGAAATTGGCAGAAAGTTTAGCCTCTTATGGAAGCAAAGGCAGTTTAATTTCCATTGATGGCGAATTGCGAACCCGT
AAATATGAAAAAGATGGCAAGACCAGCTATATGACGGAGGTTTTAGGTCATTTTTATCAGCTCTTGGAAAGCCGTGCCCA
GAGGGCTATGCGTGAAAATAACATGACCGATGATTTAACCGATTTGGTCCTTGATGAAGAGGAGGAGCTTCCTTTTTAA
ATGTATAATAAAGTAATTTTAATAGGACGTTTAGTGGCTAATCCGGAATTGATTACCACTCCTAAAAACAAACAGGTTTG
TCGGGTTTCGGTAGCTGTCAATCGCCGTTATAAAAATGCGGAAGGGGAAAGACAAGTTGATTTCATTAATTTAGTGCTTT
GGGGGAAATTGGCAGAAAGTTTAGCCTCTTATGGAAGCAAAGGCAGTTTAATTTCCATTGATGGCGAATTGCGAACCCGT
AAATATGAAAAAGATGGCAAGACCAGCTATATGACGGAGGTTTTAGGTCATTTTTATCAGCTCTTGGAAAGCCGTGCCCA
GAGGGCTATGCGTGAAAATAACATGACCGATGATTTAACCGATTTGGTCCTTGATGAAGAGGAGGAGCTTCCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
75.758 |
100 |
0.758 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
69.697 |
100 |
0.697 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
69.697 |
100 |
0.697 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
68.939 |
100 |
0.689 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus mitis SK321 |
68.182 |
100 |
0.682 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
57.143 |
84.848 |
0.485 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.133 |
85.606 |
0.386 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.283 |
80.303 |
0.364 |