Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MCCL_RS04770 Genome accession   NC_011999
Coordinates   963041..964102 (+) Length   353 a.a.
NCBI ID   WP_012656782.1    Uniprot ID   B9EBH1
Organism   Macrococcoides caseolyticum JCSC5402     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958041..969102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCL_RS04745 (MCCL_0870) yfmH 958559..959827 (+) 1269 WP_012656777.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MCCL_RS04750 (MCCL_0871) - 959820..960527 (+) 708 WP_012656778.1 SDR family NAD(P)-dependent oxidoreductase -
  MCCL_RS04755 (MCCL_0872) - 960538..961329 (+) 792 WP_012656779.1 YmfK family protein -
  MCCL_RS11845 (MCCL_0873) - 961345..962166 (+) 822 WP_012656780.1 helix-turn-helix domain-containing protein -
  MCCL_RS04765 (MCCL_0874) pgsA 962183..962764 (+) 582 WP_012656781.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MCCL_RS04770 (MCCL_0875) recA 963041..964102 (+) 1062 WP_012656782.1 recombinase RecA Machinery gene
  MCCL_RS04775 (MCCL_0876) rny 964429..965988 (+) 1560 WP_012656783.1 ribonuclease Y -
  MCCL_RS04780 - 966065..966247 (-) 183 WP_041635906.1 hypothetical protein -
  MCCL_RS04785 (MCCL_0877) - 966343..967137 (+) 795 WP_012656784.1 TIGR00282 family metallophosphoesterase -
  MCCL_RS04790 (MCCL_0878) - 967242..968975 (+) 1734 WP_012656785.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38415.58 Da        Isoelectric Point: 5.1195

>NTDB_id=32879 MCCL_RS04770 WP_012656782.1 963041..964102(+) (recA) [Macrococcoides caseolyticum JCSC5402]
MSERQKALDTVIKNMEKSFGKGAVMKLGDRTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGRENIKTYLKENPEVRDEIDQK
IRKAMGVGASLEEASAQKEEVPVEDKLFDDELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=32879 MCCL_RS04770 WP_012656782.1 963041..964102(+) (recA) [Macrococcoides caseolyticum JCSC5402]
ATGAGTGAAAGACAAAAAGCATTAGACACAGTTATTAAAAATATGGAAAAATCGTTTGGTAAAGGTGCAGTAATGAAATT
AGGAGATCGTACTGACCGTAACGTCTCTACAGTATCAAGCGGTTCTATTACATTAGATAGTGCACTTGGTGTTGGTGGTT
ATCCAAAAGGCCGTATTATAGAAATTTATGGTCCTGAAAGTTCAGGTAAGACAACGGTGGCACTACATGCCATCGCAGAG
GTACAGCGTCAAGGTGGCGTTGCCGCATTTATTGATGCTGAGCATGCGCTTGATCCGGTATATGCTAAGAATCTTGGAGT
AGATATCGAAAACCTTTACTTATCTCAACCTGACCACGGTGAACAAGGATTAGAAATTGCAGAAGCATTTGTCAGAAGTG
GTGCGGTAGACATTATTGTGGTCGATTCAGTTGCAGCTTTAACACCTAAAGCGGAAATTGAAGGAGAGATGGGAGACTCG
CATATGGGACTTCAAGCGCGTCTTATGTCTCAAGCGTTACGTAAGTTATCAGGTTCTGTATCGAAGTCTAACACGATTGC
AATATTCATCAACCAAGTACGTGAGAAGATTGGTGTAATGTTCGGTAATCCAGAAACGACGCCAGGTGGCCGTGCGCTTA
AATTCTATTCTTCAGTACGTCTCGAAGTACGTCGTGCAGAACAATTGAAACAAGGGCAGGAAATTGTAGGTAATAGAACA
AAGATCAAGGTCGTTAAAAACAAAGTTGCACCTCCTTTTAAAGTAGCAGAAGTTGATATTATGTACGGCAAAGGTATTTC
TCGTGAAGGGGAAATCGTTGATTTAGGTGCAGAATATGAAGTGCTGCAAAAGTCAGGGGCATGGTACTCTTATGATGGAG
AACGTATTGGCCAAGGGCGAGAAAATATTAAGACTTATCTGAAAGAAAACCCAGAAGTACGTGACGAAATCGATCAGAAG
ATTCGTAAGGCGATGGGTGTCGGTGCTTCATTAGAAGAGGCATCAGCACAGAAAGAAGAAGTGCCGGTAGAAGATAAGTT
ATTCGACGATGAGTTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9EBH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.453

92.635

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

68.272

100

0.683
  recA Streptococcus mitis SK321

62.534

100

0.643
  recA Streptococcus pyogenes NZ131

68.293

92.918

0.635
  recA Streptococcus mutans UA159

67.477

93.201

0.629
  recA Streptococcus mitis NCTC 12261

64.431

97.167

0.626
  recA Streptococcus pneumoniae TIGR4

65.758

93.484

0.615
  recA Streptococcus pneumoniae Rx1

65.758

93.484

0.615
  recA Streptococcus pneumoniae D39

65.758

93.484

0.615
  recA Streptococcus pneumoniae R6

65.758

93.484

0.615
  recA Acinetobacter baylyi ADP1

63.798

95.467

0.609
  recA Acinetobacter baumannii D1279779

63.127

96.034

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.848

93.484

0.606
  recA Neisseria gonorrhoeae strain FA1090

62.874

94.618

0.595
  recA Neisseria gonorrhoeae MS11

62.874

94.618

0.595
  recA Neisseria gonorrhoeae MS11

62.874

94.618

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

92.068

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.596

91.218

0.589
  recA Vibrio cholerae strain A1552

64.596

91.218

0.589
  recA Pseudomonas stutzeri DSM 10701

59.312

98.867

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.815

88.669

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

93.201

0.581
  recA Helicobacter pylori 26695

62.769

92.068

0.578
  recA Helicobacter pylori strain NCTC11637

62.769

92.068

0.578
  recA Glaesserella parasuis strain SC1401

61.92

91.501

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

92.635

0.564

Multiple sequence alignment