Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FOY90_RS05365 | Genome accession | NZ_CP041772 |
| Coordinates | 1117001..1117429 (-) | Length | 142 a.a. |
| NCBI ID | WP_126880393.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 243931 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1112001..1122429
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOY90_RS05340 (FOY90_05340) | - | 1112104..1113120 (+) | 1017 | WP_032728035.1 | IS30-like element IS1394 family transposase | - |
| FOY90_RS05345 (FOY90_05345) | - | 1113150..1113257 (-) | 108 | Protein_1037 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FOY90_RS05350 (FOY90_05350) | - | 1113408..1115663 (-) | 2256 | WP_003094643.1 | DUF1631 domain-containing protein | - |
| FOY90_RS05355 (FOY90_05355) | nadC | 1115949..1116797 (+) | 849 | WP_003094645.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FOY90_RS05365 (FOY90_05365) | pilA | 1117001..1117429 (-) | 429 | WP_126880393.1 | pilin | Machinery gene |
| FOY90_RS05370 (FOY90_05370) | - | 1117498..1118514 (+) | 1017 | WP_032728035.1 | IS30-like element IS1394 family transposase | - |
| FOY90_RS05375 (FOY90_05375) | pilB | 1118798..1120498 (+) | 1701 | WP_003094647.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FOY90_RS05380 (FOY90_05380) | pilC | 1120502..1121722 (+) | 1221 | WP_003094649.1 | type II secretion system F family protein | Machinery gene |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14420.23 Da Isoelectric Point: 4.8286
>NTDB_id=328628 FOY90_RS05365 WP_126880393.1 1117001..1117429(-) (pilA) [Pseudomonas aeruginosa strain 243931]
MIVVAIIGILAAIAIPQYQNYVSRSQVSRVMAEAGSLKTAVEACLQDGRTAVGTAAGQCDPGATGSSLLTGASQTSQTLP
TNTGVPQVLDPLTTQTTIIATFGNGASAAISGQTLTWTRDVNGGWSCATTVDAKFRPNGCTD
MIVVAIIGILAAIAIPQYQNYVSRSQVSRVMAEAGSLKTAVEACLQDGRTAVGTAAGQCDPGATGSSLLTGASQTSQTLP
TNTGVPQVLDPLTTQTTIIATFGNGASAAISGQTLTWTRDVNGGWSCATTVDAKFRPNGCTD
Nucleotide
Download Length: 429 bp
>NTDB_id=328628 FOY90_RS05365 WP_126880393.1 1117001..1117429(-) (pilA) [Pseudomonas aeruginosa strain 243931]
ATGATCGTAGTTGCGATCATTGGTATTCTGGCTGCAATCGCAATTCCCCAATATCAGAACTATGTTTCTCGCTCTCAGGT
CTCCAGGGTTATGGCAGAGGCTGGCTCCTTGAAGACTGCAGTTGAGGCCTGCCTCCAGGATGGTCGTACTGCTGTGGGTA
CTGCTGCTGGTCAATGCGACCCGGGTGCGACGGGTTCCAGTTTGTTGACTGGTGCTTCTCAGACTTCTCAAACCCTGCCA
ACCAATACCGGTGTTCCGCAGGTTCTGGATCCTCTGACTACTCAAACCACTATCATTGCGACTTTTGGTAACGGTGCATC
CGCAGCTATTTCTGGCCAGACTCTGACCTGGACTCGTGATGTTAATGGTGGCTGGAGCTGTGCTACTACCGTAGATGCTA
AATTCCGTCCTAATGGCTGTACTGACTGA
ATGATCGTAGTTGCGATCATTGGTATTCTGGCTGCAATCGCAATTCCCCAATATCAGAACTATGTTTCTCGCTCTCAGGT
CTCCAGGGTTATGGCAGAGGCTGGCTCCTTGAAGACTGCAGTTGAGGCCTGCCTCCAGGATGGTCGTACTGCTGTGGGTA
CTGCTGCTGGTCAATGCGACCCGGGTGCGACGGGTTCCAGTTTGTTGACTGGTGCTTCTCAGACTTCTCAAACCCTGCCA
ACCAATACCGGTGTTCCGCAGGTTCTGGATCCTCTGACTACTCAAACCACTATCATTGCGACTTTTGGTAACGGTGCATC
CGCAGCTATTTCTGGCCAGACTCTGACCTGGACTCGTGATGTTAATGGTGGCTGGAGCTGTGCTACTACCGTAGATGCTA
AATTCCGTCCTAATGGCTGTACTGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Pseudomonas aeruginosa PAK |
42.254 |
100 |
0.423 |
| pilA | Vibrio cholerae strain A1552 |
40 |
100 |
0.408 |
| pilA | Vibrio cholerae C6706 |
40 |
100 |
0.408 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40 |
100 |
0.408 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.838 |
100 |
0.394 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.931 |
100 |
0.387 |
| pilA2 | Legionella pneumophila str. Paris |
37.241 |
100 |
0.38 |
| pilA | Acinetobacter baumannii strain A118 |
37.589 |
99.296 |
0.373 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.364 |
100 |
0.366 |