Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TGR7_RS03890 Genome accession   NC_011901
Coordinates   845507..846718 (-) Length   403 a.a.
NCBI ID   WP_012637366.1    Uniprot ID   B8GN17
Organism   Thioalkalivibrio sulfidiphilus HL-EbGr7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 840507..851718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TGR7_RS03865 (Tgr7_0781) - 841365..842318 (+) 954 WP_012637361.1 Nudix family hydrolase -
  TGR7_RS03870 (Tgr7_0782) - 842315..842788 (+) 474 WP_012637362.1 hypothetical protein -
  TGR7_RS03875 (Tgr7_0783) zapD 842917..843759 (-) 843 WP_049764610.1 cell division protein ZapD -
  TGR7_RS03880 (Tgr7_0784) coaE 843796..844401 (-) 606 WP_012637364.1 dephospho-CoA kinase -
  TGR7_RS03885 (Tgr7_0785) pilD 844532..845398 (-) 867 WP_012637365.1 A24 family peptidase Machinery gene
  TGR7_RS03890 (Tgr7_0786) pilC 845507..846718 (-) 1212 WP_012637366.1 type II secretion system F family protein Machinery gene
  TGR7_RS03895 (Tgr7_0787) pilB 846723..848438 (-) 1716 WP_041440910.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TGR7_RS03900 (Tgr7_0788) - 849041..850843 (+) 1803 WP_012637368.1 ABC transporter ATP-binding protein -
  TGR7_RS16985 (Tgr7_0789) - 850903..851688 (-) 786 WP_187148415.1 polysaccharide pyruvyl transferase family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 44156.77 Da        Isoelectric Point: 7.3190

>NTDB_id=32736 TGR7_RS03890 WP_012637366.1 845507..846718(-) (pilC) [Thioalkalivibrio sulfidiphilus HL-EbGr7]
MAETQNITFQWEGLDKKGSRVKGETTATSELLARAELRRQGINPTRVRKKPKSLFGGKKKIVPKDIAVFLRQMATMMEAG
VPLVQAFDIVGRGHENPSMQELILAMKSDVEGGTTFSAALGKHPKYFDDLVVNLVNAGEQAGALETLLDKIATYKEKTES
LKAKIKKALFYPTAVLVVAFIVTAILLIFVVPQFQDLFQGFGADLPVFTQFVIGISEFFQSYWWAIFGGLIGAVVLFKQA
HLRSPGFRRWLDLMSLKIPVIGELLRKASIARFARTLSTMFAAGVPLVEAMESVAGATGNALYREATLRIRDETAAGTQL
QAAMRNTALFPNMVVQMVAIGEESGALDDMLDKVADFYEEEVDNMVDSLSSLMEPMIMAFLGVVVGGLVIAMYLPIFQLG
AVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=32736 TGR7_RS03890 WP_012637366.1 845507..846718(-) (pilC) [Thioalkalivibrio sulfidiphilus HL-EbGr7]
ATGGCCGAGACCCAGAACATCACCTTCCAGTGGGAAGGACTCGACAAGAAGGGCAGTCGAGTCAAGGGCGAGACCACCGC
GACCAGCGAACTCCTCGCCCGCGCGGAACTTCGTCGTCAGGGCATTAACCCGACCAGGGTCCGCAAAAAGCCCAAATCAC
TATTCGGCGGCAAGAAAAAGATTGTTCCGAAGGATATCGCCGTCTTTTTGCGCCAGATGGCCACCATGATGGAAGCAGGC
GTGCCCCTGGTACAGGCCTTTGACATCGTCGGAAGAGGACATGAAAACCCCTCCATGCAGGAGCTGATCCTGGCCATGAA
GTCCGACGTGGAAGGTGGCACGACCTTCTCTGCGGCACTGGGCAAGCACCCCAAGTACTTCGACGACCTTGTGGTCAACC
TGGTCAATGCCGGCGAACAGGCCGGCGCACTCGAAACCCTCCTGGACAAGATCGCCACCTACAAGGAAAAGACCGAGTCC
CTCAAAGCCAAGATCAAAAAGGCCCTGTTCTACCCCACTGCGGTGCTGGTGGTGGCTTTCATCGTGACCGCAATTCTTCT
GATATTCGTGGTACCCCAGTTCCAGGACCTGTTTCAGGGATTTGGCGCAGACCTGCCCGTTTTCACCCAGTTCGTGATCG
GTATTTCTGAGTTCTTCCAATCCTATTGGTGGGCAATCTTCGGCGGATTGATTGGTGCCGTTGTGCTCTTCAAGCAGGCC
CATTTACGTTCTCCCGGTTTCCGGCGCTGGCTGGATCTCATGTCTCTCAAGATTCCCGTCATCGGAGAGCTGCTGCGCAA
GGCCTCCATCGCCCGATTCGCACGTACACTCTCCACCATGTTCGCAGCCGGCGTGCCGCTGGTGGAAGCCATGGAATCCG
TGGCCGGCGCAACCGGCAATGCCCTGTACCGCGAGGCCACCTTGCGCATCCGAGACGAAACCGCCGCCGGCACTCAGCTT
CAGGCCGCCATGCGCAACACGGCCCTGTTCCCCAACATGGTGGTCCAGATGGTGGCCATCGGCGAGGAATCCGGTGCCCT
GGACGACATGTTGGACAAGGTCGCCGACTTCTACGAGGAAGAAGTGGACAACATGGTGGACAGCCTCTCGAGCCTCATGG
AGCCCATGATCATGGCCTTCCTGGGCGTCGTGGTGGGCGGCCTTGTGATTGCCATGTACCTGCCGATCTTCCAGCTGGGC
GCAGTGGTGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8GN17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.158

99.007

0.625
  pilC Legionella pneumophila strain ERS1305867

60.05

98.759

0.593
  pilC Acinetobacter baumannii D1279779

57.286

98.759

0.566
  pilC Acinetobacter baylyi ADP1

56.423

98.511

0.556
  pilG Neisseria meningitidis 44/76-A

48.232

98.263

0.474
  pilG Neisseria gonorrhoeae MS11

48.232

98.263

0.474
  pilC Vibrio cholerae strain A1552

43.735

100

0.442
  pilC Vibrio campbellii strain DS40M4

42.857

99.007

0.424
  pilC Thermus thermophilus HB27

37.74

100

0.39

Multiple sequence alignment