Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CKR_RS18600 Genome accession   NC_011837
Coordinates   3880508..3880948 (-) Length   146 a.a.
NCBI ID   WP_012104222.1    Uniprot ID   A5N439
Organism   Clostridium kluyveri NBRC 12016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3875508..3885948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKR_RS18575 (CKR_3446) rplI 3876326..3876769 (-) 444 WP_012104217.1 50S ribosomal protein L9 -
  CKR_RS18580 (CKR_3447) - 3876769..3878754 (-) 1986 WP_012104218.1 DHH family phosphoesterase -
  CKR_RS18585 (CKR_3448) - 3878773..3879759 (-) 987 WP_012104219.1 YybS family protein -
  CKR_RS18590 (CKR_3449) - 3879771..3880088 (-) 318 WP_012104220.1 MazG-like family protein -
  CKR_RS18595 (CKR_3450) rpsR 3880232..3880486 (-) 255 WP_012104221.1 30S ribosomal protein S18 -
  CKR_RS18600 (CKR_3451) ssbA 3880508..3880948 (-) 441 WP_012104222.1 single-stranded DNA-binding protein Machinery gene
  CKR_RS18605 (CKR_3452) rpsF 3880961..3881248 (-) 288 WP_012104223.1 30S ribosomal protein S6 -
  CKR_RS18610 (CKR_3453) - 3881379..3881588 (-) 210 WP_012104224.1 DUF951 domain-containing protein -
  CKR_RS18615 (CKR_3454) - 3881593..3882447 (-) 855 WP_012104225.1 mechanosensitive ion channel family protein -
  CKR_RS18620 (CKR_3455) ytvI 3882822..3883877 (+) 1056 WP_012104226.1 sporulation integral membrane protein YtvI -
  CKR_RS18625 (CKR_3456) yyaC 3883954..3884541 (+) 588 WP_012104227.1 spore protease YyaC -
  CKR_RS18630 (CKR_3457) - 3884726..3885229 (-) 504 WP_012104228.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16558.59 Da        Isoelectric Point: 4.7239

>NTDB_id=32564 CKR_RS18600 WP_012104222.1 3880508..3880948(-) (ssbA) [Clostridium kluyveri NBRC 12016]
MNKVVLIGRLTKDPELRFTPGMGKAVTTFTIAVDRRFTRDGQREADFIPIVVWGKQAESTANYMSKGKLIGISGRIQTRS
YESRDGIRKYVTEVIAEEVQFLEWGQKSVRDNNTEVLSEDFGKNSNFNEDIYGEDITPVDEGDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=32564 CKR_RS18600 WP_012104222.1 3880508..3880948(-) (ssbA) [Clostridium kluyveri NBRC 12016]
TTGAATAAAGTTGTTTTAATTGGAAGATTAACTAAAGATCCGGAATTAAGGTTTACACCAGGAATGGGAAAAGCAGTTAC
TACCTTTACTATAGCTGTTGATAGAAGATTTACTAGAGATGGACAGAGAGAGGCAGATTTTATTCCCATTGTTGTCTGGG
GAAAACAAGCTGAATCTACTGCTAATTATATGAGTAAAGGAAAGCTTATAGGCATTAGTGGAAGAATCCAAACTAGAAGC
TATGAATCTAGAGACGGTATTAGAAAATATGTTACTGAAGTTATTGCAGAAGAAGTCCAATTTCTTGAATGGGGACAGAA
GTCTGTAAGAGACAATAACACTGAAGTTTTATCTGAAGATTTTGGTAAAAACTCAAATTTTAATGAAGATATCTACGGAG
AAGATATTACTCCAGTTGATGAGGGAGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A5N439

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.93

100

0.541
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

78.082

0.411
  ssbA Streptococcus mutans UA159

49.138

79.452

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.696

78.767

0.384
  ssb Latilactobacillus sakei subsp. sakei 23K

53.846

71.233

0.384
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

70.548

0.377
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.826

78.767

0.377
  ssbB/cilA Streptococcus mitis SK321

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae Rx1

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae D39

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae R6

46.957

78.767

0.37

Multiple sequence alignment