Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | DXF96_RS04505 | Genome accession | NZ_CP033687 |
| Coordinates | 942657..943016 (+) | Length | 119 a.a. |
| NCBI ID | WP_110134263.1 | Uniprot ID | - |
| Organism | Heyndrickxia coagulans strain DSM 2314 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 937657..948016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXF96_RS04490 (DXF96_04555) | - | 938573..941374 (+) | 2802 | WP_017550307.1 | DEAD/DEAH box helicase | - |
| DXF96_RS04495 (DXF96_04560) | - | 941462..941896 (+) | 435 | WP_014096781.1 | DUF4944 domain-containing protein | - |
| DXF96_RS04500 (DXF96_04565) | - | 941928..942350 (-) | 423 | WP_014096780.1 | YwpF-like family protein | - |
| DXF96_RS04505 (DXF96_04570) | ssbB | 942657..943016 (+) | 360 | WP_110134263.1 | single-stranded DNA-binding protein | Machinery gene |
| DXF96_RS17665 | - | 943023..943187 (+) | 165 | WP_013860712.1 | hypothetical protein | - |
| DXF96_RS04510 (DXF96_04575) | fabZ | 943372..943797 (-) | 426 | WP_014096778.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| DXF96_RS04515 (DXF96_04580) | - | 943925..944755 (-) | 831 | WP_110134264.1 | flagellar hook-basal body protein | - |
| DXF96_RS04520 (DXF96_04585) | - | 944783..945571 (-) | 789 | WP_014096776.1 | flagellar hook-basal body protein | - |
| DXF96_RS04525 (DXF96_04590) | - | 945610..946611 (-) | 1002 | WP_014096775.1 | rod shape-determining protein | - |
| DXF96_RS04530 (DXF96_04595) | spoIIID | 947001..947267 (-) | 267 | WP_014096774.1 | sporulation transcriptional regulator SpoIIID | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13527.42 Da Isoelectric Point: 9.6895
>NTDB_id=324826 DXF96_RS04505 WP_110134263.1 942657..943016(+) (ssbB) [Heyndrickxia coagulans strain DSM 2314]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGE
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGE
Nucleotide
Download Length: 360 bp
>NTDB_id=324826 DXF96_RS04505 WP_110134263.1 942657..943016(+) (ssbB) [Heyndrickxia coagulans strain DSM 2314]
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGAGTAG
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.818 |
92.437 |
0.571 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
89.076 |
0.471 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.552 |
97.479 |
0.454 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.336 |
100 |
0.403 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.667 |
90.756 |
0.378 |
| ssbA | Streptococcus mutans UA159 |
40.741 |
90.756 |
0.37 |