Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VS_RS12005 | Genome accession | NC_011753 |
| Coordinates | 2739554..2739964 (+) | Length | 136 a.a. |
| NCBI ID | WP_009847601.1 | Uniprot ID | A0A2N7NI46 |
| Organism | Vibrio atlanticus | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2734554..2744964
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VS_RS11980 (VS_2543) | pdhR | 2736481..2737242 (-) | 762 | WP_009847596.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| VS_RS11990 (VS_2545) | ampD | 2737725..2738325 (-) | 601 | Protein_2343 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VS_RS12000 (VS_2546) | nadC | 2738409..2739299 (+) | 891 | WP_012604742.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VS_RS12005 (VS_2547) | pilA | 2739554..2739964 (+) | 411 | WP_009847601.1 | pilin | Machinery gene |
| VS_RS12010 (VS_2548) | pilB | 2739964..2741649 (+) | 1686 | WP_041472903.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VS_RS12015 (VS_2549) | pilC | 2741665..2742891 (+) | 1227 | WP_012604744.1 | type II secretion system F family protein | Machinery gene |
| VS_RS12020 (VS_2550) | pilD | 2742960..2743829 (+) | 870 | WP_012604745.1 | prepilin peptidase | Machinery gene |
| VS_RS12025 | coaE | 2743832..2744453 (+) | 622 | Protein_2349 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14190.46 Da Isoelectric Point: 8.5043
>NTDB_id=32285 VS_RS12005 WP_009847601.1 2739554..2739964(+) (pilA) [Vibrio atlanticus]
MKNKRKNQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSELSSGLATMRALITPAELIHQEKGVIVQATALGDLGTAT
DANSLGKITVSADDTLLFTFGATSSISAATLTFARGNSGWVCTNSKQATIPLDGCV
MKNKRKNQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSELSSGLATMRALITPAELIHQEKGVIVQATALGDLGTAT
DANSLGKITVSADDTLLFTFGATSSISAATLTFARGNSGWVCTNSKQATIPLDGCV
Nucleotide
Download Length: 411 bp
>NTDB_id=32285 VS_RS12005 WP_009847601.1 2739554..2739964(+) (pilA) [Vibrio atlanticus]
ATGAAAAACAAAAGAAAAAACCAGAAAGGCTTCACGCTGATTGAATTGATGATTGTGGTTGCGATCATTGGTGTGCTGTC
TGCAATTGCAATTCCGGCTTATAAAGATTATGTATCTAAAAGTGAACTATCCTCTGGTTTAGCCACAATGAGAGCACTAA
TTACACCAGCAGAATTAATCCATCAAGAAAAGGGCGTGATCGTTCAAGCTACCGCTTTGGGCGATCTAGGAACAGCTACA
GATGCAAATTCACTTGGTAAAATAACAGTTTCAGCTGACGACACACTGTTATTCACTTTTGGAGCAACTAGCTCAATAAG
TGCAGCAACCTTAACATTTGCTCGAGGTAACTCTGGGTGGGTTTGTACTAACAGTAAACAAGCAACGATCCCTCTAGATG
GCTGTGTGTAG
ATGAAAAACAAAAGAAAAAACCAGAAAGGCTTCACGCTGATTGAATTGATGATTGTGGTTGCGATCATTGGTGTGCTGTC
TGCAATTGCAATTCCGGCTTATAAAGATTATGTATCTAAAAGTGAACTATCCTCTGGTTTAGCCACAATGAGAGCACTAA
TTACACCAGCAGAATTAATCCATCAAGAAAAGGGCGTGATCGTTCAAGCTACCGCTTTGGGCGATCTAGGAACAGCTACA
GATGCAAATTCACTTGGTAAAATAACAGTTTCAGCTGACGACACACTGTTATTCACTTTTGGAGCAACTAGCTCAATAAG
TGCAGCAACCTTAACATTTGCTCGAGGTAACTCTGGGTGGGTTTGTACTAACAGTAAACAAGCAACGATCCCTCTAGATG
GCTGTGTGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
56.429 |
100 |
0.581 |
| pilA | Pseudomonas aeruginosa PAK |
41.497 |
100 |
0.449 |
| pilA | Vibrio cholerae strain A1552 |
41.667 |
100 |
0.441 |
| pilA | Vibrio cholerae C6706 |
41.667 |
100 |
0.441 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.667 |
100 |
0.441 |
| comP | Acinetobacter baylyi ADP1 |
39.041 |
100 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.324 |
100 |
0.39 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.683 |
92.647 |
0.368 |