Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VS_RS12015 Genome accession   NC_011753
Coordinates   2741665..2742891 (+) Length   408 a.a.
NCBI ID   WP_012604744.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2736665..2747891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS11990 (VS_2545) ampD 2737725..2738325 (-) 601 Protein_2343 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VS_RS12000 (VS_2546) nadC 2738409..2739299 (+) 891 WP_012604742.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VS_RS12005 (VS_2547) pilA 2739554..2739964 (+) 411 WP_009847601.1 pilin Machinery gene
  VS_RS12010 (VS_2548) pilB 2739964..2741649 (+) 1686 WP_041472903.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VS_RS12015 (VS_2549) pilC 2741665..2742891 (+) 1227 WP_012604744.1 type II secretion system F family protein Machinery gene
  VS_RS12020 (VS_2550) pilD 2742960..2743829 (+) 870 WP_012604745.1 prepilin peptidase Machinery gene
  VS_RS12025 coaE 2743832..2744453 (+) 622 Protein_2349 dephospho-CoA kinase -
  VS_RS12030 (VS_2553) zapD 2744480..2745220 (+) 741 WP_012604748.1 cell division protein ZapD -
  VS_RS12035 (VS_2554) yacG 2745301..2745498 (+) 198 WP_012604749.1 DNA gyrase inhibitor YacG -
  VS_RS12040 (VS_2555) rplS 2745814..2746167 (-) 354 WP_009847607.1 50S ribosomal protein L19 -
  VS_RS12045 (VS_2556) trmD 2746227..2746967 (-) 741 WP_009847608.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VS_RS12050 (VS_2557) rimM 2746994..2747548 (-) 555 WP_009847609.1 ribosome maturation factor RimM -
  VS_RS12055 (VS_2558) rpsP 2747575..2747823 (-) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45173.15 Da        Isoelectric Point: 10.0882

>NTDB_id=32287 VS_RS12015 WP_012604744.1 2741665..2742891(+) (pilC) [Vibrio atlanticus]
MRTKLQSQLKNYHWKGINSSGKKVSGQTLALAELEVREKLKEQHIQIKKIKKKSISAVTSLTHRVKAKDITILTRQLATM
LATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTASTHFDDLYTDLVATGELSGNLAQVFERLATYRE
KSEQLKSKVIKALIYPTMVVAVALTVSYLMLTMVIPEFESMFSSFGADLPWFTQQVLSLSHWVQAYSLYAAVGIGLVTLF
TYQLRQRSYSIRLLFSRLGLRFPILGGVLAKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTAIGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=32287 VS_RS12015 WP_012604744.1 2741665..2742891(+) (pilC) [Vibrio atlanticus]
ATGAGAACTAAACTGCAGTCACAATTAAAAAACTACCACTGGAAAGGCATAAATAGCTCAGGCAAAAAGGTGTCCGGTCA
AACCTTGGCTCTAGCCGAATTAGAAGTACGAGAAAAGCTCAAAGAGCAGCATATTCAGATTAAGAAAATCAAAAAGAAAA
GTATCTCAGCAGTCACTAGTTTAACACATCGAGTCAAAGCCAAAGACATCACCATTTTGACTCGACAACTTGCGACCATG
CTTGCCACTGGCGTGCCTATCGTTCAGGCCATTAAGCTAGTGTCAGACAATCACCGTAAAGCTGAAATGAAATCAATTTT
ATTGCACATTTGTCGAGGTGTCGAAGCGGGAACCCCAATATCAAAAGCGATGCGGACGGCAAGCACTCACTTTGACGACC
TGTACACCGATTTGGTCGCTACGGGCGAGCTTTCCGGAAACCTAGCGCAAGTCTTTGAACGCTTAGCAACCTATAGAGAA
AAGAGTGAGCAGCTAAAGTCTAAGGTCATAAAAGCACTGATTTACCCCACAATGGTGGTCGCTGTCGCGCTGACTGTCTC
TTACTTAATGCTCACCATGGTCATTCCTGAATTTGAATCGATGTTTTCAAGCTTCGGGGCAGACCTCCCTTGGTTTACTC
AACAAGTACTCTCCCTTTCACATTGGGTACAGGCTTACAGTCTTTATGCTGCCGTTGGCATAGGGTTAGTCACATTATTT
ACCTACCAACTGCGTCAACGGTCTTATTCCATTCGTTTATTATTCAGCCGTCTAGGTTTGCGATTCCCTATTCTTGGCGG
AGTATTGGCCAAAGCCTCAATCGCCAAATTCAGCCGAACCTTATCAACCAGTTTTAGTTCAGGGATTCCTATTTTAACCA
GCCTGAAGACCACAGCCAAAACCGCAGGTAACCTGCATTATGAATCGGCCATCATCGAGGTTCACCGTGAAACTGCCGCT
GGCATGCCGATGTATATCGCGATGCGCAATACCGATGCTTTTCCTGAGATGGTTTTACAGATGGTCATGATAGGAGAAGA
GTCTGGCAACCTTGATGACATGCTCAATAAAATCGCATCTATTTATGAATTTGAAGTCGACAACACCGTCGATAATTTAG
GTAAGATTTTAGAACCTCTTATCATCGTATTTTTAGGCACCGCTATTGGTGGACTGGTTGTCGCGATGTACTTACCGATC
TTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80

98.039

0.784
  pilC Vibrio campbellii strain DS40M4

74.69

98.775

0.738
  pilC Acinetobacter baumannii D1279779

41.019

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.397

98.284

0.407
  pilC Acinetobacter baylyi ADP1

41.562

97.304

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.741

99.265

0.404
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilG Neisseria meningitidis 44/76-A

40.05

98.529

0.395

Multiple sequence alignment