Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   D9M09_RS22860 Genome accession   NZ_CP033019
Coordinates   5057050..5058129 (-) Length   359 a.a.
NCBI ID   WP_121670453.1    Uniprot ID   A0A3G2EEF4
Organism   Janthinobacterium agaricidamnosum strain BHSEK     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5052050..5063129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9M09_RS22850 (D9M09_22850) - 5053118..5056069 (-) 2952 WP_070218583.1 ribonucleoside-diphosphate reductase subunit alpha -
  D9M09_RS22855 (D9M09_22855) ampD 5056461..5057072 (-) 612 WP_070310136.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  D9M09_RS22860 (D9M09_22860) pilR 5057050..5058129 (-) 1080 WP_121670453.1 sigma-54 dependent transcriptional regulator Regulator
  D9M09_RS22865 (D9M09_22865) - 5058249..5058503 (-) 255 WP_070218586.1 PP0621 family protein -
  D9M09_RS22870 (D9M09_22870) ccsA 5058500..5059303 (-) 804 WP_121670454.1 cytochrome c biogenesis protein CcsA -
  D9M09_RS22875 (D9M09_22875) - 5059565..5060173 (+) 609 WP_121670455.1 hypothetical protein -
  D9M09_RS22880 (D9M09_22880) - 5060243..5061187 (-) 945 WP_121671200.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38793.03 Da        Isoelectric Point: 8.5934

>NTDB_id=320499 D9M09_RS22860 WP_121670453.1 5057050..5058129(-) (pilR) [Janthinobacterium agaricidamnosum strain BHSEK]
MSSPRTSQQTVTTTGMEPAPQLSGNSLPMQALRAQISRIARCGAPVAIRGESGTGKELAARAIHAQGARAGFPFIAVNCG
AIPEALMEAEFFGCRPGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSADEAVDVRILC
ASQHGLASGVAACTFRQDLFYRLNVIELALPPLRERRGDLQVLCEVILARLSPRRAVSLAPPVLAALAAYAFPGNVRELE
NVLERALAFADGGVIALDGLALPSAPDSMPLRAAPALPDLPERQLCLPGMAAYGVSPALPLDVYLRQAERDMIMQALVQA
RYHRARAARQLGLSVRQLRYRMQKLTIQEALLDERMDDR

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=320499 D9M09_RS22860 WP_121670453.1 5057050..5058129(-) (pilR) [Janthinobacterium agaricidamnosum strain BHSEK]
ATGTCCAGTCCCCGCACCAGCCAGCAGACCGTGACCACCACCGGCATGGAGCCGGCGCCGCAACTGAGCGGTAATTCCTT
GCCCATGCAGGCGCTGCGCGCGCAGATAAGCCGCATCGCCCGCTGCGGCGCGCCGGTGGCCATCCGCGGCGAATCAGGCA
CGGGCAAGGAACTGGCGGCGCGCGCCATCCATGCGCAGGGCGCGCGCGCCGGCTTCCCGTTTATCGCCGTCAACTGCGGC
GCCATACCCGAAGCGCTGATGGAAGCGGAATTCTTCGGCTGCCGCCCGGGCGCCTACACGGGCGCGCTGCACGAGCGCCA
GGGCTTGTTCCAGGCGGCCCATGGCGGCAGCCTGCTGCTCGACGAAGTCGACGACCTTCCGCTGGCCATGCAGGTGAAAC
TGTTGCGCGTGCTGCAGGAGCGCCGCGTGCGCAAGCTGGGCGGCAGTGCTGACGAAGCCGTCGACGTGCGCATCCTGTGC
GCCAGCCAGCATGGCCTGGCGAGCGGCGTGGCCGCCTGCACCTTTCGCCAGGATCTGTTTTACCGCCTCAATGTGATCGA
ACTGGCGCTGCCGCCGCTGCGCGAACGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTGGCGCGCCTGTCGCCAC
GCCGGGCCGTGAGCCTGGCGCCGCCCGTGCTGGCGGCCCTGGCCGCGTACGCGTTTCCCGGCAATGTGCGCGAACTGGAA
AACGTGCTGGAGCGGGCACTGGCCTTTGCCGACGGCGGCGTGATCGCGCTCGACGGGCTGGCCTTGCCATCCGCGCCGGA
CAGCATGCCGTTGCGGGCGGCGCCGGCATTGCCGGACTTGCCGGAGCGGCAACTGTGCCTACCCGGCATGGCGGCATATG
GCGTGAGCCCGGCCCTGCCGCTGGACGTGTATTTGCGTCAGGCCGAGCGCGACATGATCATGCAGGCGCTGGTCCAGGCG
CGTTATCACCGCGCGCGGGCGGCGCGTCAGCTGGGCCTGAGCGTGCGCCAGTTGCGTTACCGCATGCAGAAATTGACGAT
ACAGGAAGCATTACTTGATGAGCGGATGGACGATAGATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(305-345)

Sigma-54 interaction domain (Sigma54_activat)

(23-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2EEF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.929

93.872

0.487
  pilR Acinetobacter baumannii strain A118

43.072

92.479

0.398

Multiple sequence alignment