Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D9M09_RS17760 Genome accession   NZ_CP033019
Coordinates   3933997..3935373 (-) Length   458 a.a.
NCBI ID   WP_046683923.1    Uniprot ID   A0A7M2NMH8
Organism   Janthinobacterium agaricidamnosum strain BHSEK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3928997..3940373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9M09_RS17735 (D9M09_17735) rraA 3929163..3929657 (-) 495 WP_070223974.1 ribonuclease E activity regulator RraA -
  D9M09_RS17740 (D9M09_17740) - 3929690..3930925 (-) 1236 WP_121670028.1 MFS transporter -
  D9M09_RS17745 (D9M09_17745) - 3931026..3931826 (+) 801 WP_162995742.1 helix-turn-helix transcriptional regulator -
  D9M09_RS17750 (D9M09_17750) fliD 3931931..3933316 (-) 1386 WP_099410908.1 flagellar filament capping protein FliD -
  D9M09_RS17755 (D9M09_17755) - 3933545..3933865 (-) 321 WP_257218134.1 PilZ domain-containing protein -
  D9M09_RS17760 (D9M09_17760) radA 3933997..3935373 (-) 1377 WP_046683923.1 DNA repair protein RadA Machinery gene
  D9M09_RS17765 (D9M09_17765) alr 3935448..3936539 (-) 1092 WP_121670030.1 alanine racemase -
  D9M09_RS17775 (D9M09_17775) lplT 3936799..3938061 (+) 1263 WP_121670032.1 lysophospholipid transporter LplT -
  D9M09_RS17780 (D9M09_17780) - 3938137..3939063 (-) 927 WP_240453410.1 DUF1853 family protein -
  D9M09_RS17785 (D9M09_17785) - 3939056..3939958 (-) 903 WP_070223990.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49062.65 Da        Isoelectric Point: 7.2144

>NTDB_id=320496 D9M09_RS17760 WP_046683923.1 3933997..3935373(-) (radA) [Janthinobacterium agaricidamnosum strain BHSEK]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
STLNDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQVIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=320496 D9M09_RS17760 WP_046683923.1 3933997..3935373(-) (radA) [Janthinobacterium agaricidamnosum strain BHSEK]
ATGGCAAAAGTCAAGACCATCTACACCTGCAGCGATTGCGGCGCCATCAGCAACAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAATACCATGGTGGAAACTCTGCCCGAGACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGTTGTCGCTCGACGATATCGACGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCGGGTGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCGAACATGTCGCACCACAAGCGCGTGCTGTACGTCAGCGGCGAAGAATCGGGCGCGCAGA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTTAAATTGCAGGCGGAGATCCAGCTGGAAAAGATCCTC
TCCACCTTGAACGACCTGAAGCCGGAAGTGGTGGTCATCGACTCGATCCAGACCGTGTATTCGGACGCCCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCGCAGCTGACGCGGGCGGCCAAGCAGACGGGCGTGACGATCATTC
TGGTCGGCCACGTGACGAAAGAGGGGGCGCTGGCCGGCCCCCGCGTGCTCGAGCATATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCCCATTCCAGTTTCCGCCTCGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAATGAGCTGGGGGTGTT
CGCCATGACGGAAAAGGGCTTGAAAGGGGTGTCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCG
GCTCGTGCGTGATGGTGACGCAGGAAGGCACGCGCCCCTTGCTGGTGGAAATCCAGGCCCTCGTCGACACGAGTCACTTA
CCCAATGCGCGCCGGCTGTCCGTCGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCATGCGGG
CATCGCCGCCTTCGACCAGGATGTGTTCATCAACGCCGTCGGCGGCGTCAAAATCACGGAACCGGCGGCCGACCTGGCCG
TATTGCTGGCGATTAACTCGTCGATGCGCAACAAGCCCCTGCCGCGGGGACTCGTGGTGTTTGGCGAAGTGGGGCTGGCC
GGCGAAATCCGCCCCGCGCCGCGGGGCCAGGAGCGCTTGCGCGAAGCGGCCAAACTGGGCTTTACCCTGGCCGTGGTGCC
CAAGTCCAACCTGCCGAAGCAAGTCATCGAAGGCCTCAAGGTCATCGGCGTCGAGCGCATCGACGAAGCGTTCAATAAAT
TGCGCGACCTGGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M2NMH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.584

100

0.487
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus mitis SK321

47.391

100

0.476

Multiple sequence alignment