Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TMZ1T_RS05735 Genome accession   NC_011662
Coordinates   1300005..1301234 (-) Length   409 a.a.
NCBI ID   WP_004302460.1    Uniprot ID   N6Z4N8
Organism   Thauera aminoaromatica     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295005..1306234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMZ1T_RS05715 (Tmz1t_1170) aspS 1296132..1297931 (-) 1800 WP_004302467.1 aspartate--tRNA ligase -
  TMZ1T_RS05720 (Tmz1t_1171) - 1298019..1298645 (-) 627 WP_004302465.1 DUF502 domain-containing protein -
  TMZ1T_RS05725 (Tmz1t_1172) - 1298728..1298991 (-) 264 WP_012584903.1 FmdB family zinc ribbon protein -
  TMZ1T_RS05730 (Tmz1t_1173) pilD 1299149..1300000 (-) 852 WP_004302462.1 A24 family peptidase Machinery gene
  TMZ1T_RS05735 (Tmz1t_1174) pilC 1300005..1301234 (-) 1230 WP_004302460.1 type II secretion system F family protein Machinery gene
  TMZ1T_RS05740 (Tmz1t_1175) pilB 1301250..1302965 (-) 1716 WP_004302458.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TMZ1T_RS05745 (Tmz1t_1176) - 1303054..1304334 (-) 1281 WP_004302456.1 HlyC/CorC family transporter -
  TMZ1T_RS05750 (Tmz1t_1177) - 1304418..1305248 (-) 831 WP_012584904.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44027.94 Da        Isoelectric Point: 9.8620

>NTDB_id=32008 TMZ1T_RS05735 WP_004302460.1 1300005..1301234(-) (pilC) [Thauera aminoaromatica]
MATASRAARATGPREDLYIWEGKDKTGKVVRGEIRATGDAMVQAMLRRQGIQVIKIRKQKMARGGRISEKDIALFTRQLA
TMMKSGVPLLQAFDIAMKGSGNAALVRLLNDIRTDVETGSNLSQAFAKHPAHFDRLFCNLVAAGEQAGILDGLLDRIATY
KEKILAIKSKIKSALFYPAAVVVVAGLVISVMMLFVIPEFKSVFSSFGAELPVPTLMVIAISDAFVAYWYLIFGALIAAL
VAIAWSYKRSTAMQIAVDRLVLRIPVIGAIIRKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNHVYVVATHQIQSEV
STGTSLTVAMQNAEVFPTMVVQMVSIGEESGQLDAMLGKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTIIGGLVVAMYL
PIFKLGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=32008 TMZ1T_RS05735 WP_004302460.1 1300005..1301234(-) (pilC) [Thauera aminoaromatica]
ATGGCCACTGCAAGCCGCGCGGCACGTGCCACCGGTCCGAGGGAGGACCTTTATATCTGGGAAGGCAAGGACAAGACCGG
GAAGGTCGTCCGCGGCGAGATCCGCGCCACCGGCGACGCCATGGTCCAGGCCATGCTGCGCCGCCAGGGCATCCAGGTGA
TCAAGATCCGCAAGCAGAAGATGGCGCGCGGCGGACGCATCTCCGAAAAGGACATCGCGCTGTTCACCCGCCAGCTCGCC
ACGATGATGAAATCCGGTGTGCCGCTGCTGCAGGCCTTCGACATCGCAATGAAAGGCTCCGGCAACGCCGCGCTCGTGCG
CCTGCTCAACGACATCCGCACCGACGTCGAGACCGGCTCCAACCTGTCGCAGGCCTTCGCCAAGCACCCTGCGCACTTCG
ACCGGCTGTTCTGCAACCTGGTCGCAGCGGGCGAGCAGGCGGGCATCCTCGACGGCCTGCTCGACCGCATCGCCACCTAC
AAGGAAAAGATCCTCGCGATCAAGAGCAAGATCAAGTCGGCGCTGTTCTATCCTGCCGCGGTGGTCGTGGTGGCGGGTCT
CGTGATCTCGGTGATGATGCTGTTCGTGATCCCCGAGTTCAAGAGCGTGTTCTCCAGCTTCGGTGCCGAGCTGCCGGTGC
CCACCTTGATGGTCATCGCCATCTCGGACGCCTTCGTGGCCTACTGGTACCTGATCTTCGGCGCCCTCATCGCGGCCCTC
GTGGCGATCGCCTGGAGCTACAAGCGCTCGACTGCGATGCAGATCGCGGTCGACCGGCTGGTGCTGCGCATCCCGGTGAT
CGGCGCGATCATCCGCAAGGCCACGGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTCGCGGCCGGCGTGCCGCTGG
TCGAGGCGCTCGACTCGGTGGGAGGCGCATCGGGCAACCACGTCTATGTGGTGGCGACACATCAGATCCAGAGCGAGGTC
AGCACCGGCACCAGCCTGACGGTCGCGATGCAGAACGCGGAAGTCTTTCCCACCATGGTGGTGCAGATGGTGTCGATCGG
CGAGGAGTCCGGCCAGCTCGACGCCATGCTGGGCAAGGTCGCCGATTTCTTCGAGCAGGAGGTGGACGACGCGGTCGCCG
GCCTGTCGCAACTGCTCGAGCCGCTGATCATGGTCTTCCTCGGCACCATCATCGGCGGCCTGGTGGTGGCGATGTACCTG
CCGATCTTCAAGCTCGGTTCGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N6Z4N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.778

96.822

0.511
  pilC Pseudomonas stutzeri DSM 10701

50.877

97.555

0.496
  pilG Neisseria gonorrhoeae MS11

48.866

97.066

0.474
  pilC Acinetobacter baylyi ADP1

48.492

97.311

0.472
  pilG Neisseria meningitidis 44/76-A

48.363

97.066

0.469
  pilC Acinetobacter baumannii D1279779

47.859

97.066

0.465
  pilC Vibrio cholerae strain A1552

43.596

99.267

0.433
  pilC Vibrio campbellii strain DS40M4

40.148

99.267

0.399
  pilC Thermus thermophilus HB27

39.651

98.044

0.389

Multiple sequence alignment