Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C0073_RS02210 Genome accession   NZ_CP032839
Coordinates   445320..446561 (-) Length   413 a.a.
NCBI ID   WP_101530010.1    Uniprot ID   A0A494TS01
Organism   Aeromonas veronii strain FC951     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440320..451561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0073_RS02185 (C0073_002185) mutT 442311..442715 (+) 405 WP_101530006.1 8-oxo-dGTP diphosphatase MutT -
  C0073_RS02190 (C0073_002190) yacG 442792..442992 (-) 201 WP_213392112.1 DNA gyrase inhibitor YacG -
  C0073_RS02195 (C0073_002195) zapD 442999..443720 (-) 722 Protein_422 cell division protein ZapD -
  C0073_RS02200 (C0073_002200) coaE 443758..444372 (-) 615 WP_101530008.1 dephospho-CoA kinase -
  C0073_RS02205 (C0073_002205) pilD 444386..445258 (-) 873 WP_101530009.1 A24 family peptidase Machinery gene
  C0073_RS02210 (C0073_002210) pilC 445320..446561 (-) 1242 WP_101530010.1 type II secretion system F family protein Machinery gene
  C0073_RS02215 (C0073_002215) pilB 446802..448508 (-) 1707 WP_101530011.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  C0073_RS02220 (C0073_002220) - 448512..448883 (-) 372 WP_276209678.1 pilin -
  C0073_RS24425 - 448890..448937 (-) 48 Protein_428 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C0073_RS02225 (C0073_002225) nadC 449223..450092 (-) 870 WP_101530013.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C0073_RS02230 (C0073_002230) - 450096..450566 (-) 471 WP_101530014.1 retropepsin-like aspartic protease -
  C0073_RS02235 (C0073_002235) ampD 450697..451272 (+) 576 WP_101530015.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45413.52 Da        Isoelectric Point: 9.7221

>NTDB_id=319053 C0073_RS02210 WP_101530010.1 445320..446561(-) (pilC) [Aeromonas veronii strain FC951]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINSVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=319053 C0073_RS02210 WP_101530010.1 445320..446561(-) (pilC) [Aeromonas veronii strain FC951]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTACAGGCCGACAGCATCAACAGCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAAAAATCCCAAGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGC
CAAATAACTACCATGCTCTCCGCCGGCGTACCGCTAGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAAGCGCTGCGCCGCCATCCCC
TCTACTTTGATGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAATCGGAAGCGCTCAAGTCGAAGATCAAAAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCTGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGTACTCTGTCGACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGGGCCTCTGGTAACTATGTCTATCGCACCGCGGTCATGGCCATTCGC
AACGAGGTGGTGGCGGGCATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTAGGGGTACTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTTGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A494TS01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment