Detailed information NTG0319052

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C0073_RS02205
• Genome accession: NZ_CP032839
• Coordinates: 444386..445258 (-)
• Length: 290 a.a.
• NCBI ID: WP_101530009.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain FC951
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 439386..450258

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0073_RS02180 (C0073_002180)	secA	439405..442125 (+)	2721	WP_101530005.1	preprotein translocase subunit SecA	-
C0073_RS02185 (C0073_002185)	mutT	442311..442715 (+)	405	WP_101530006.1	8-oxo-dGTP diphosphatase MutT	-
C0073_RS02190 (C0073_002190)	yacG	442792..442992 (-)	201	WP_213392112.1	DNA gyrase inhibitor YacG	-
C0073_RS02195 (C0073_002195)	zapD	442999..443720 (-)	722	Protein_422	cell division protein ZapD	-
C0073_RS02200 (C0073_002200)	coaE	443758..444372 (-)	615	WP_101530008.1	dephospho-CoA kinase	-
C0073_RS02205 (C0073_002205)	pilD	444386..445258 (-)	873	WP_101530009.1	A24 family peptidase	Machinery gene
C0073_RS02210 (C0073_002210)	pilC	445320..446561 (-)	1242	WP_101530010.1	type II secretion system F family protein	Machinery gene
C0073_RS02215 (C0073_002215)	pilB	446802..448508 (-)	1707	WP_101530011.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C0073_RS02220 (C0073_002220)	-	448512..448883 (-)	372	WP_276209678.1	pilin	-
C0073_RS24425	-	448890..448937 (-)	48	Protein_428	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C0073_RS02225 (C0073_002225)	nadC	449223..450092 (-)	870	WP_101530013.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32237.55 Da
• Isoelectric Point: 6.8283

>NTDB_id=319052 C0073_RS02205 WP_101530009.1 444386..445258(-) (pilD) [Aeromonas veronii strain FC951]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSLTVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVIGAMVGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=319052 C0073_RS02205 WP_101530009.1 444386..445258(-) (pilD) [Aeromonas veronii strain FC951]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTACCCATCATGCTGGAACGGGAATGGCAGGCCGAGTATCGCGGCTACTTTT
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTTGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGCTGACCGTAGCCATGGTCATAACCCCGGGCTGGGGTA
CGTTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCAAGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
CGCCATGGTGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAACTGCTCACCGGCAAAGAAGGAATGGGTTATG
GCGACTTCAAGCTGCTGGCGGCACTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCACAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATTGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.627	98.966	0.6
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	53.957	95.862	0.517
pilD	Acinetobacter nosocomialis M2	53.957	95.862	0.517
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448