Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D7405_RS07220 Genome accession   NZ_CP032668
Coordinates   1412534..1414225 (+) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes strain 52873     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1407534..1419225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7405_RS07195 (D7405_07205) - 1407684..1408565 (+) 882 WP_012581362.1 polyprenyl synthetase family protein -
  D7405_RS07200 (D7405_07210) - 1408764..1408964 (+) 201 WP_003719639.1 cold-shock protein -
  D7405_RS07205 (D7405_07215) dxs 1409131..1411050 (+) 1920 WP_077954278.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D7405_RS07210 (D7405_07220) - 1411047..1411871 (+) 825 WP_003729890.1 TlyA family RNA methyltransferase -
  D7405_RS07215 (D7405_07225) ahrC 1412062..1412511 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  D7405_RS07220 (D7405_07230) recN 1412534..1414225 (+) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  D7405_RS07225 (D7405_07235) - 1414355..1415221 (+) 867 WP_070217246.1 phosphate acyltransferase -
  D7405_RS07230 (D7405_07240) buk 1415358..1416425 (+) 1068 WP_012581357.1 butyrate kinase -
  D7405_RS07235 (D7405_07245) lpdA 1416440..1417867 (+) 1428 WP_070214999.1 dihydrolipoyl dehydrogenase -
  D7405_RS07240 (D7405_07250) - 1417892..1418887 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=317872 D7405_RS07220 WP_003738883.1 1412534..1414225(+) (recN) [Listeria monocytogenes strain 52873]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=317872 D7405_RS07220 WP_003738883.1 1412534..1414225(+) (recN) [Listeria monocytogenes strain 52873]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAGCGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGAGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGCCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGTCAAATTAGGCAATCACTGGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACC
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTAAAAGCAGAACTAACAAAACAGGCGAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACGTTAGAAAAGCAAATCAAACAAGAATTAAATCATTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGCCATTTGCCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGAGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535

Multiple sequence alignment