Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   E8M05_RS10765 Genome accession   NZ_CP039457
Coordinates   2064802..2065395 (-) Length   197 a.a.
NCBI ID   WP_003066922.1    Uniprot ID   E0PGF6
Organism   Streptococcus pasteurianus strain WUSP067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2059802..2070395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS10740 (E8M05_10730) cinA 2059834..2061093 (-) 1260 WP_003066899.1 competence/damage-inducible protein A Machinery gene
  E8M05_RS10745 (E8M05_10735) - 2061225..2062415 (-) 1191 WP_048790986.1 MFS transporter -
  E8M05_RS11260 - 2062575..2062748 (-) 174 WP_048790985.1 hypothetical protein -
  E8M05_RS11685 - 2062798..2063007 (-) 210 WP_231729899.1 hypothetical protein -
  E8M05_RS11690 - 2062965..2063246 (-) 282 WP_003066911.1 hypothetical protein -
  E8M05_RS11695 - 2063316..2063525 (-) 210 WP_003066913.1 hypothetical protein -
  E8M05_RS11700 - 2063547..2063723 (-) 177 WP_003066916.1 hypothetical protein -
  E8M05_RS10760 (E8M05_10750) - 2063871..2064722 (+) 852 WP_003066919.1 helix-turn-helix transcriptional regulator -
  E8M05_RS10765 (E8M05_10755) ruvA 2064802..2065395 (-) 594 WP_003066922.1 Holliday junction branch migration protein RuvA Machinery gene
  E8M05_RS10770 (E8M05_10760) hexB 2065397..2067340 (-) 1944 WP_003066924.1 DNA mismatch repair endonuclease MutL Machinery gene
  E8M05_RS10775 (E8M05_10765) hexA 2067456..2070026 (-) 2571 WP_003066925.1 DNA mismatch repair protein MutS Machinery gene
  E8M05_RS10780 (E8M05_10770) - 2070013..2070369 (-) 357 WP_003066927.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21782.20 Da        Isoelectric Point: 5.3568

>NTDB_id=317873 E8M05_RS10765 WP_003066922.1 2064802..2065395(-) (ruvA) [Streptococcus pasteurianus strain WUSP067]
MYDYIKGKLTKITAKYIVIEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTATNEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKA

Nucleotide


Download         Length: 594 bp        

>NTDB_id=317873 E8M05_RS10765 WP_003066922.1 2064802..2065395(-) (ruvA) [Streptococcus pasteurianus strain WUSP067]
ATGTATGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTATCGAGGCTGGAGGGCTGGGCTATAT
TGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGCGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAACTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATGGCAAAGCTTCTCAGACAAAAACAGCTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCACTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTCTTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PGF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

69.192

100

0.695
  ruvA Streptococcus pneumoniae D39

69.192

100

0.695
  ruvA Streptococcus pneumoniae TIGR4

69.036

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426