Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D7I46_RS12505 Genome accession   NZ_CP032627
Coordinates   2613615..2614004 (+) Length   129 a.a.
NCBI ID   WP_120773173.1    Uniprot ID   A0A514Z7Q9
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2613615..2620576 2613615..2614004 within 0


Gene organization within MGE regions


Location: 2613615..2620576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS12505 (D7I46_12505) ssbB 2613615..2614004 (+) 390 WP_120773173.1 single-stranded DNA-binding protein Machinery gene
  D7I46_RS12510 (D7I46_12510) groES 2614281..2614565 (+) 285 WP_120773174.1 co-chaperone GroES -
  D7I46_RS12515 (D7I46_12515) groL 2614745..2616367 (+) 1623 WP_120773175.1 chaperonin GroEL -
  D7I46_RS12520 (D7I46_12520) - 2616616..2617428 (-) 813 WP_120773176.1 MBL fold metallo-hydrolase -
  D7I46_RS12525 (D7I46_12525) - 2617632..2619065 (-) 1434 WP_120773177.1 ATP-binding protein -
  D7I46_RS12530 (D7I46_12530) yycF 2619058..2619759 (-) 702 WP_120773178.1 response regulator YycF -
  D7I46_RS12535 (D7I46_12535) tmk 2619941..2620576 (+) 636 WP_120773179.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14701.62 Da        Isoelectric Point: 7.0186

>NTDB_id=317331 D7I46_RS12505 WP_120773173.1 2613615..2614004(+) (ssbB) [Lactococcus allomyrinae strain 1JSPR-7]
MNKTMLIGRLTSSAELSKTSNDKSYTRITLAVNRRFKNENGEREADFISVVFWGKLAETLSSYSKKGTLISVEGEIRTRN
YTDKSNQKHYVTEILGMNYDLLESRATIALRENAAKTEEILLEAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=317331 D7I46_RS12505 WP_120773173.1 2613615..2614004(+) (ssbB) [Lactococcus allomyrinae strain 1JSPR-7]
ATGAATAAAACAATGCTTATCGGCAGACTCACTAGCTCAGCCGAACTATCGAAAACGTCAAATGACAAATCCTACACTCG
TATCACATTGGCAGTCAATCGCCGTTTTAAAAATGAAAATGGTGAACGAGAAGCAGATTTTATCTCAGTAGTATTCTGGG
GAAAATTAGCAGAAACACTCTCTTCCTACTCCAAAAAAGGAACACTTATCTCCGTAGAAGGAGAAATAAGAACTCGAAAC
TATACAGATAAGTCCAATCAGAAACACTATGTCACTGAAATTTTGGGAATGAATTACGACCTACTTGAAAGTAGAGCAAC
GATTGCTTTAAGAGAAAACGCAGCAAAGACGGAAGAAATATTACTCGAAGCTGAAGAATTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514Z7Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

79.845

100

0.798
  ssbB Streptococcus sobrinus strain NIDR 6715-7

62.308

100

0.628
  ssbB/cilA Streptococcus pneumoniae TIGR4

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae Rx1

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae D39

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae R6

60

100

0.605
  ssbB/cilA Streptococcus mitis NCTC 12261

60

100

0.605
  ssbB/cilA Streptococcus mitis SK321

60

100

0.605
  ssbA Streptococcus mutans UA159

56.923

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

42.5

93.023

0.395
  ssbB Bacillus subtilis subsp. subtilis str. 168

40.87

89.147

0.364

Multiple sequence alignment