Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D7D53_RS00210 Genome accession   NZ_CP032621
Coordinates   42601..43857 (+) Length   418 a.a.
NCBI ID   WP_120769761.1    Uniprot ID   A0A387AY60
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37601..48857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS00185 (D7D53_00185) ndk 39229..39651 (+) 423 WP_049510948.1 nucleoside-diphosphate kinase -
  D7D53_RS00190 (D7D53_00190) comM 39782..40414 (+) 633 WP_245941799.1 competence protein Regulator
  D7D53_RS00195 (D7D53_00195) tsaE 40509..40952 (+) 444 WP_004262103.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  D7D53_RS00200 (D7D53_00200) - 40942..41460 (+) 519 WP_120769759.1 GNAT family N-acetyltransferase -
  D7D53_RS00205 (D7D53_00205) brpA 41468..42523 (+) 1056 WP_120769760.1 biofilm formation/cell division transcriptional regulator BrpA -
  D7D53_RS00210 (D7D53_00210) cinA 42601..43857 (+) 1257 WP_120769761.1 competence/damage-inducible protein A Machinery gene
  D7D53_RS00215 (D7D53_00215) recA 43912..45066 (+) 1155 WP_070479987.1 recombinase RecA Machinery gene
  D7D53_RS00220 (D7D53_00220) - 45181..46551 (+) 1371 WP_120769762.1 MATE family efflux transporter -
  D7D53_RS00225 (D7D53_00225) - 46648..47364 (+) 717 WP_023940351.1 YebC/PmpR family DNA-binding transcriptional regulator -
  D7D53_RS00230 (D7D53_00230) - 47414..48061 (-) 648 WP_120769763.1 DUF308 domain-containing protein -
  D7D53_RS00235 (D7D53_00235) - 48275..48745 (+) 471 WP_120769764.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45116.34 Da        Isoelectric Point: 4.5335

>NTDB_id=317165 D7D53_RS00210 WP_120769761.1 42601..43857(+) (cinA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLKIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKELVFDPQAQEKLDVFFAQRPDYARTPNNERQAQLVEGATPLPNETGLAVGGILEVDGVNYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILSDLIDNQTDPTLAPYAKTGEVTLRLSTKVSSQEEANQALDILENQI
LDRQTFEGISLRELCYGYGEESSLASIVVEELKKQGKTITAAESLTAGLFQATVADFSGASSIFKGGFVTYSLEEKSRML
DIPAKDLEEQGVVSEFTAQKMAEQARSKTQSDFGLSLTGVAGPDSLEGYPAGTVFLGLAQEHGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=317165 D7D53_RS00210 WP_120769761.1 42601..43857(+) (cinA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAATACCAATGCTCAGTTTTTATCAGA
AAAACTAGCAGAGATTGGGGTAGACGTATATTTTCAGACGGCTGTAGGAGACAATGAAGCTCGTCTCTTATCCCTGCTTA
AGATTGCCAGTCAACGTAGCAGTCTGGTGATTTTGACAGGTGGTTTGGGGCCAACTGAGGACGATCTAACCAAACAAACC
CTAGCTAAATTTTTAGGGAAAGAATTAGTCTTCGATCCTCAGGCGCAGGAGAAGTTGGATGTCTTTTTTGCCCAGAGACC
AGACTATGCCCGAACACCGAATAATGAAAGACAAGCTCAACTTGTAGAAGGGGCGACTCCACTACCAAACGAAACAGGAC
TGGCTGTGGGGGGAATATTGGAAGTCGATGGAGTGAACTATGTCGTCCTTCCCGGTCCACCAAGTGAATTAAAACCCATG
GTTTTAAACCAACTTCTACCTAAGTTGATGACAGGGAGTAAGCTATATTCCCGCGTTCTTCGTTTCTTTGGGATTGGCGA
AAGTCAGTTGGTTACGATTTTGTCTGATTTGATTGATAATCAAACAGATCCGACCTTGGCCCCTTATGCTAAGACAGGAG
AAGTCACTCTGCGTCTGTCAACAAAGGTTAGCAGTCAAGAAGAGGCGAATCAAGCGCTGGATATCTTAGAAAACCAAATC
TTGGACCGCCAGACTTTCGAAGGAATTTCTTTACGAGAACTTTGTTATGGTTATGGGGAAGAGTCCAGTTTAGCTAGCAT
TGTGGTAGAAGAGCTGAAAAAACAAGGGAAAACCATCACGGCTGCTGAGAGTTTGACGGCAGGGCTTTTCCAAGCCACTG
TGGCAGATTTTTCGGGTGCATCAAGTATATTCAAGGGTGGTTTTGTGACCTATAGCTTGGAGGAAAAATCAAGGATGTTG
GATATTCCTGCCAAGGATTTAGAAGAACAGGGTGTGGTGTCTGAATTTACAGCGCAGAAGATGGCTGAGCAGGCACGAAG
TAAGACCCAGTCTGATTTTGGTCTTAGTTTGACTGGAGTGGCAGGACCAGATAGCCTAGAAGGGTATCCAGCTGGGACAG
TCTTCCTAGGATTGGCACAGGAGCATGGAACTGAGGTCATCAAGGTTAATATTGGAGGCAGAAGTCGAGCAGATGTACGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(262-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

96.411

100

0.964
  cinA Streptococcus mitis NCTC 12261

95.455

100

0.955
  cinA Streptococcus pneumoniae TIGR4

93.062

100

0.931
  cinA Streptococcus pneumoniae Rx1

92.823

100

0.928
  cinA Streptococcus pneumoniae R6

92.823

100

0.928
  cinA Streptococcus pneumoniae D39

92.584

100

0.926
  cinA Streptococcus mutans UA159

71.292

100

0.713
  cinA Streptococcus suis isolate S10

54.087

99.522

0.538
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment