Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   D7D53_RS00245 Genome accession   NZ_CP032621
Coordinates   50479..52239 (+) Length   586 a.a.
NCBI ID   WP_120769766.1    Uniprot ID   A0A387B829
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 43164..78791 50479..52239 within 0


Gene organization within MGE regions


Location: 43164..78791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS00215 (D7D53_00215) recA 43912..45066 (+) 1155 WP_070479987.1 recombinase RecA Machinery gene
  D7D53_RS00220 (D7D53_00220) - 45181..46551 (+) 1371 WP_120769762.1 MATE family efflux transporter -
  D7D53_RS00225 (D7D53_00225) - 46648..47364 (+) 717 WP_023940351.1 YebC/PmpR family DNA-binding transcriptional regulator -
  D7D53_RS00230 (D7D53_00230) - 47414..48061 (-) 648 WP_120769763.1 DUF308 domain-containing protein -
  D7D53_RS00235 (D7D53_00235) - 48275..48745 (+) 471 WP_120769764.1 MarR family winged helix-turn-helix transcriptional regulator -
  D7D53_RS00240 (D7D53_00240) rcrP 48720..50489 (+) 1770 WP_120769765.1 ABC transporter ATP-binding protein Regulator
  D7D53_RS00245 (D7D53_00245) rcrQ 50479..52239 (+) 1761 WP_120769766.1 ABC transporter ATP-binding protein Regulator
  D7D53_RS00250 (D7D53_00250) - 52335..52838 (+) 504 WP_162927856.1 phosphatase PAP2 family protein -
  D7D53_RS00255 (D7D53_00255) - 52952..53398 (+) 447 WP_120769768.1 LytTR family DNA-binding domain-containing protein -
  D7D53_RS00260 (D7D53_00260) - 53403..54077 (+) 675 WP_120769769.1 LiaF transmembrane domain-containing protein -
  D7D53_RS00265 (D7D53_00265) - 54198..54566 (+) 369 WP_033681017.1 hypothetical protein -
  D7D53_RS00270 (D7D53_00270) - 54690..54872 (+) 183 WP_009729741.1 hypothetical protein -
  D7D53_RS00275 (D7D53_00275) - 54872..55996 (+) 1125 WP_033681018.1 replication initiator protein A -
  D7D53_RS09965 - 55990..56157 (+) 168 WP_000910110.1 hypothetical protein -
  D7D53_RS00280 (D7D53_00280) - 56162..56428 (+) 267 WP_033681019.1 hypothetical protein -
  D7D53_RS10255 - 56451..56585 (+) 135 WP_265182510.1 hypothetical protein -
  D7D53_RS00285 (D7D53_00285) - 56588..56803 (+) 216 WP_033681021.1 helix-turn-helix transcriptional regulator -
  D7D53_RS00290 (D7D53_00290) - 57094..57396 (+) 303 WP_033681022.1 hypothetical protein -
  D7D53_RS00295 (D7D53_00295) - 57415..58197 (+) 783 WP_033681023.1 LPXTG cell wall anchor domain-containing protein -
  D7D53_RS00300 (D7D53_00300) - 58216..61245 (+) 3030 WP_120769770.1 SspB-related isopeptide-forming adhesin -
  D7D53_RS00305 (D7D53_00305) - 61309..61809 (+) 501 WP_033681025.1 hypothetical protein -
  D7D53_RS00310 (D7D53_00310) - 61883..62107 (+) 225 WP_000340303.1 hypothetical protein -
  D7D53_RS00315 (D7D53_00315) - 62135..62884 (+) 750 WP_033681026.1 hypothetical protein -
  D7D53_RS00320 (D7D53_00320) - 62926..64038 (+) 1113 WP_033681027.1 hypothetical protein -
  D7D53_RS00325 (D7D53_00325) - 64100..64321 (+) 222 WP_001047223.1 hypothetical protein -
  D7D53_RS00330 (D7D53_00330) - 64318..64665 (+) 348 WP_000197459.1 PrgI family mobile element protein -
  D7D53_RS00335 (D7D53_00335) - 64625..66979 (+) 2355 WP_033681029.1 VirB4-like conjugal transfer ATPase, CD1110 family -
  D7D53_RS00340 (D7D53_00340) - 67005..69641 (+) 2637 WP_033681031.1 phage tail tip lysozyme -
  D7D53_RS00345 (D7D53_00345) - 69661..70305 (+) 645 WP_033681032.1 hypothetical protein -
  D7D53_RS00350 (D7D53_00350) - 70302..70574 (+) 273 WP_033681033.1 hypothetical protein -
  D7D53_RS00355 (D7D53_00355) - 70528..71367 (+) 840 WP_033681035.1 hypothetical protein -
  D7D53_RS00360 (D7D53_00360) - 71380..71898 (+) 519 WP_033681036.1 hypothetical protein -
  D7D53_RS00365 (D7D53_00365) - 71895..73694 (+) 1800 WP_033681037.1 VirD4-like conjugal transfer protein, CD1115 family -
  D7D53_RS00370 (D7D53_00370) - 73715..73978 (+) 264 WP_000449753.1 hypothetical protein -
  D7D53_RS00375 (D7D53_00375) - 73969..78306 (+) 4338 WP_033681038.1 PBECR4 domain-containing protein -

Sequence


Protein


Download         Length: 586 a.a.        Molecular weight: 64759.55 Da        Isoelectric Point: 5.0414

>NTDB_id=317168 D7D53_RS00245 WP_120769766.1 50479..52239(+) (rcrQ) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MENKKMSLWKQSKPYLAGLQFALLIAFLATILSNIITVYGPTRIKEMTNIIASGLATSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRTAIAYKINRLPLRYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSTLLVVAVLVTM
FGMNWILALVTVVSTLIGFIFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFATLNHRLYDS
IWKSQFISGIMMPIMVFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLGEEEMEDESHKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNILMKFYEIDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKGISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDDLMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=317168 D7D53_RS00245 WP_120769766.1 50479..52239(+) (rcrQ) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGGAAAATAAGAAAATGTCTCTCTGGAAACAGAGTAAACCCTATCTTGCAGGCCTCCAGTTTGCCCTTCTAATCGCCTT
TCTAGCAACAATCTTATCCAATATCATTACTGTATATGGTCCAACCCGCATCAAGGAAATGACCAATATCATTGCCAGTG
GCCTGGCAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATCTATGTGATTGGACTCCTA
TCAAATTATTTGCAGGCCTTTCTGTTTACAACAGCCATTCAACGTTTTTCAGAGCGTTTGAGAACAGCTATTGCATATAA
AATCAATCGCCTACCACTGAGATATTTTGATGGACACTCTCAAGGGGATACCTTGTCTCGTGTAACCAATGACGTTGACA
CTGCAGCTCAGTCCCTTAATCAAAGTCTGGGAACAGTTCTTTCATCCACTTTACTGGTCGTGGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACCCTTATTGGTTTTATTTTCGTGTCCGTCTTTATGGG
CAAATCACAGGGATTCTTTAAGAGTCAGCAACAGGATTTGGCAGCTGTAAATGGTTATGTGGAAGAAATGTACTCTGGTC
ATAACGTGGTGACCAGCTACAATGCTATCGAGAGCACGAAAGAAGAGTTTGCGACATTAAACCATCGTCTGTATGACAGT
ATATGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGGTGTTTATTGGGAACTTTAGCTATGCCTTAGTGAT
TATCGTTGGTGCAGCCTTAGCTCTGAATGGGCAGATTAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCCCTTTCCCAAATTGCTCAAGGGATTACCAGTCTTCAGCAGGCTAGCGCAGCCATGGGACGTGTCTTCGAA
TTCTTAGGTGAAGAGGAAATGGAAGATGAATCTCATAAAGAAAGACAGTTGAGCGATATGAAAGGGCAAGTGGTCTTTGA
TCGAGTTTCCTTTGGTTACACACCAGAGCGAACCATTATCCATGACTTTTCTGCGACTGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACTGGAGCTGGTAAGACAACCATTGTCAATATTTTGATGAAGTTTTATGAGATTGATAAGGGAAGC
ATCCGTATCGATGGTGTCGATACCAAGGAGATGAAGCGTTCGGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGCACTATCCGAGACAATCTCATCTATAACCAAAAGGGGATTAGTGATGAGCGCGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATTATGACCCTACCAGATGGTTACGATACCGTCTTGGACGATACAGTGACCTTG
TCTGTCGGACAAAAACAACTCTTGACCATCGCTCGTGCTTTGTTGAAAGATGCGCCACTCCTAATCCTAGATGAGGCGAC
CTCTTCGGTTGATACACGGACGGAGGAATTGATCCAGAAAGCCATGGACCGTTTGATGGAGGGTAGAACTTCCTTTGTCA
TTGCCCACCGCTTGTCAACCATCCGCAATGCTGACCTGATTCTTGTTATGAAGGATGGCAATATCATCGAGCAAGGAAAT
CATGATGATCTGATGGCGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAGTTTACAGAAGACGAAGCAGAAGAATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A387B829

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.781

99.659

0.666


Multiple sequence alignment