Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   D7D50_RS01945 Genome accession   NZ_CP032620
Coordinates   368299..368694 (-) Length   131 a.a.
NCBI ID   WP_120701343.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 363299..373694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS01925 (D7D50_01925) - 363786..365093 (-) 1308 WP_120701340.1 ABC transporter substrate-binding protein -
  D7D50_RS01930 (D7D50_01930) - 365090..365776 (-) 687 WP_023022093.1 response regulator transcription factor -
  D7D50_RS01935 (D7D50_01935) - 365773..367092 (-) 1320 WP_120701341.1 sensor histidine kinase -
  D7D50_RS01940 (D7D50_01940) - 367092..368078 (-) 987 WP_120701342.1 substrate-binding domain-containing protein -
  D7D50_RS01945 (D7D50_01945) ssbB/cilA 368299..368694 (-) 396 WP_120701343.1 single-stranded DNA-binding protein Machinery gene
  D7D50_RS01955 (D7D50_01955) ytpR 368931..369557 (-) 627 WP_120701344.1 YtpR family tRNA-binding protein -
  D7D50_RS01960 (D7D50_01960) - 369572..369889 (-) 318 WP_023022088.1 thioredoxin family protein -
  D7D50_RS01965 (D7D50_01965) - 369886..370176 (-) 291 WP_023022087.1 DUF4651 domain-containing protein -
  D7D50_RS01970 (D7D50_01970) pepA 370324..371388 (+) 1065 WP_120701345.1 glutamyl aminopeptidase -
  D7D50_RS01975 (D7D50_01975) - 371548..373032 (+) 1485 WP_023022085.1 DUF1846 domain-containing protein -
  D7D50_RS10125 - 373142..373297 (-) 156 WP_167444697.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14674.65 Da        Isoelectric Point: 5.9328

>NTDB_id=317118 D7D50_RS01945 WP_120701343.1 368299..368694(-) (ssbB/cilA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MYNKVILIGRLVADPELHKTNTDKSVARATLAVNRRYKDQNGEREADFITLVVWGKLAETLVSYANKGSLLSVDGELRTR
RYEKNGATQYVTEVLCQGFQLLESRAQRAMRANGAGGDLADLILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=317118 D7D50_RS01945 WP_120701343.1 368299..368694(-) (ssbB/cilA) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGTACAATAAAGTAATTTTAATCGGGCGCCTTGTGGCAGACCCAGAGCTTCATAAGACCAATACAGACAAGTCCGTTGC
CCGCGCAACTCTGGCTGTTAATCGGCGTTACAAGGATCAAAATGGCGAGCGGGAGGCGGACTTTATCACCCTAGTGGTCT
GGGGGAAATTAGCAGAGACCCTTGTCTCCTATGCCAACAAGGGGAGCTTGCTCTCAGTAGATGGCGAGCTTCGAACCAGA
CGTTATGAGAAAAATGGGGCGACACAATATGTGACAGAAGTGCTCTGTCAAGGCTTCCAGCTCTTAGAAAGTCGCGCTCA
ACGAGCGATGCGGGCTAATGGAGCGGGAGGGGATCTAGCGGATCTCATCCTCGAAGAGGAAGAACTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.909

83.969

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

47.321

85.496

0.405

Multiple sequence alignment