Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D6Z43_RS15030 Genome accession   NZ_CP032616
Coordinates   3188871..3190088 (+) Length   405 a.a.
NCBI ID   WP_120652960.1    Uniprot ID   -
Organism   Pseudomonas sp. DY-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3183871..3195088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6Z43_RS15005 (D6Z43_15005) - 3184258..3184485 (+) 228 WP_120652956.1 hypothetical protein -
  D6Z43_RS15015 (D6Z43_15015) - 3184683..3186356 (-) 1674 WP_120652957.1 PglL family O-oligosaccharyltransferase -
  D6Z43_RS15020 (D6Z43_15020) - 3186424..3186900 (-) 477 WP_120652958.1 pilin -
  D6Z43_RS15025 (D6Z43_15025) pilB 3187162..3188868 (+) 1707 WP_120652959.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D6Z43_RS15030 (D6Z43_15030) pilC 3188871..3190088 (+) 1218 WP_120652960.1 type II secretion system F family protein Machinery gene
  D6Z43_RS15035 (D6Z43_15035) pilD 3190092..3190964 (+) 873 WP_120652961.1 A24 family peptidase Machinery gene
  D6Z43_RS15040 (D6Z43_15040) coaE 3190961..3191572 (+) 612 WP_120652962.1 dephospho-CoA kinase -
  D6Z43_RS15045 (D6Z43_15045) yacG 3191569..3191769 (+) 201 WP_120652963.1 DNA gyrase inhibitor YacG -
  D6Z43_RS15050 (D6Z43_15050) - 3191890..3192105 (-) 216 WP_120652964.1 hypothetical protein -
  D6Z43_RS15055 (D6Z43_15055) - 3192384..3193073 (-) 690 WP_120652965.1 energy-coupling factor ABC transporter permease -
  D6Z43_RS15060 (D6Z43_15060) - 3193070..3193537 (-) 468 WP_120652966.1 FAD/FMN-containing dehydrogenase -
  D6Z43_RS15065 (D6Z43_15065) - 3193542..3193964 (-) 423 WP_120652967.1 GNAT family N-acetyltransferase -
  D6Z43_RS15070 (D6Z43_15070) - 3194099..3194725 (+) 627 WP_120652968.1 DUF1780 domain-containing protein -
  D6Z43_RS15075 (D6Z43_15075) - 3194814..3194987 (+) 174 WP_120652969.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44035.77 Da        Isoelectric Point: 9.6473

>NTDB_id=317045 D6Z43_RS15030 WP_120652960.1 3188871..3190088(+) (pilC) [Pseudomonas sp. DY-1]
MAEKALKTSTFAWEGTDKKGSKVRGELSGQNPALVKAQLRKQGINPTKVRKKSTSLLSAGKKIKPLDIALFTRQLATMMK
AGVPLMQSFDIIGEGFEKPAMRTLVNEVKQEVSSGNSLANSLRKKPEYFDELYCNLVDSGEQAGALETLLDRIATYKEKT
EALKAKIKKAMNYPIAVVVVAIIVSAILLIKVVPQFQSVFANFGAELPAFTLMVINLSELLQEWWFIVLLGFFAAGFLIQ
QTHKKSEKFRDWVDHTVLKLPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGASGNVVFKNAVLKVKQDVSTGM
QLNFSMRTTGVFPAMAVQMTAIGEESGALDDMLDKVASFYEAEVDNAVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=317045 D6Z43_RS15030 WP_120652960.1 3188871..3190088(+) (pilC) [Pseudomonas sp. DY-1]
ATGGCGGAAAAAGCGCTGAAAACAAGTACCTTCGCCTGGGAAGGTACGGACAAGAAAGGCAGCAAGGTCAGGGGCGAACT
TAGTGGCCAGAACCCGGCGCTGGTGAAGGCGCAACTGCGCAAACAGGGCATCAACCCCACCAAGGTACGCAAGAAATCCA
CTTCTCTGCTGAGCGCAGGGAAGAAGATCAAGCCCTTGGACATCGCCCTGTTCACCCGCCAGCTAGCCACCATGATGAAG
GCCGGCGTGCCCCTGATGCAGTCCTTCGACATCATTGGCGAGGGCTTCGAGAAGCCGGCGATGCGTACGCTGGTGAACGA
GGTCAAGCAGGAGGTTTCCTCGGGCAACAGCCTGGCCAACTCCCTGCGCAAGAAACCGGAATACTTCGACGAGTTGTATT
GCAACCTGGTGGACTCAGGCGAACAGGCAGGTGCCCTGGAAACGCTGCTTGACCGGATTGCCACCTACAAGGAAAAGACC
GAGGCCCTGAAGGCCAAGATCAAGAAGGCGATGAACTATCCGATTGCGGTGGTCGTGGTCGCGATCATTGTTTCCGCGAT
TCTGCTGATCAAGGTGGTGCCTCAGTTCCAGTCGGTGTTCGCGAATTTTGGTGCTGAGCTTCCGGCCTTCACCCTAATGG
TCATTAACCTTTCCGAACTCCTTCAGGAATGGTGGTTCATTGTGTTGCTTGGCTTCTTCGCGGCTGGCTTTCTAATTCAA
CAGACCCACAAGAAGTCTGAAAAATTCCGCGACTGGGTTGATCACACCGTGCTCAAGCTCCCGATCGTCGGCGATATCCT
CTACAAGTCTGCAGTAGCTCGCTTTGCCCGCACGCTGGCCACCACCTTCGCCGCTGGCGTTCCTCTTGTGGACGCATTGG
ATTCAGTAGCAGGCGCCAGCGGTAACGTCGTTTTCAAGAACGCCGTACTCAAGGTCAAGCAGGACGTGTCCACCGGTATG
CAGCTGAACTTCTCCATGCGCACCACGGGAGTCTTCCCCGCCATGGCCGTGCAAATGACCGCCATCGGCGAAGAATCCGG
CGCACTGGATGACATGCTCGACAAGGTCGCCAGCTTCTATGAAGCCGAAGTGGACAACGCCGTCGATGGCCTTACCGCTC
TCATGGAGCCCATGATCATGGCCGTGCTCGGCGTGCTGGTCGGCGGTTTGATCATTGCGATGTACCTCCCCATCTTCCAG
CTCGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80

100

0.8
  pilC Acinetobacter baylyi ADP1

61.029

100

0.615
  pilC Acinetobacter baumannii D1279779

60.741

100

0.607
  pilC Legionella pneumophila strain ERS1305867

52.882

98.519

0.521
  pilG Neisseria gonorrhoeae MS11

46.287

99.753

0.462
  pilG Neisseria meningitidis 44/76-A

45.522

99.259

0.452
  pilC Vibrio cholerae strain A1552

42.26

100

0.425
  pilC Vibrio campbellii strain DS40M4

41.855

98.519

0.412
  pilC Thermus thermophilus HB27

37.25

98.765

0.368

Multiple sequence alignment