Detailed information NTG0317046

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D6Z43_RS15035
• Genome accession: NZ_CP032616
• Coordinates: 3190092..3190964 (+)
• Length: 290 a.a.
• NCBI ID: WP_120652961.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DY-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3185092..3195964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D6Z43_RS15020 (D6Z43_15020)	-	3186424..3186900 (-)	477	WP_120652958.1	pilin	-
D6Z43_RS15025 (D6Z43_15025)	pilB	3187162..3188868 (+)	1707	WP_120652959.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D6Z43_RS15030 (D6Z43_15030)	pilC	3188871..3190088 (+)	1218	WP_120652960.1	type II secretion system F family protein	Machinery gene
D6Z43_RS15035 (D6Z43_15035)	pilD	3190092..3190964 (+)	873	WP_120652961.1	A24 family peptidase	Machinery gene
D6Z43_RS15040 (D6Z43_15040)	coaE	3190961..3191572 (+)	612	WP_120652962.1	dephospho-CoA kinase	-
D6Z43_RS15045 (D6Z43_15045)	yacG	3191569..3191769 (+)	201	WP_120652963.1	DNA gyrase inhibitor YacG	-
D6Z43_RS15050 (D6Z43_15050)	-	3191890..3192105 (-)	216	WP_120652964.1	hypothetical protein	-
D6Z43_RS15055 (D6Z43_15055)	-	3192384..3193073 (-)	690	WP_120652965.1	energy-coupling factor ABC transporter permease	-
D6Z43_RS15060 (D6Z43_15060)	-	3193070..3193537 (-)	468	WP_120652966.1	FAD/FMN-containing dehydrogenase	-
D6Z43_RS15065 (D6Z43_15065)	-	3193542..3193964 (-)	423	WP_120652967.1	GNAT family N-acetyltransferase	-
D6Z43_RS15070 (D6Z43_15070)	-	3194099..3194725 (+)	627	WP_120652968.1	DUF1780 domain-containing protein	-
D6Z43_RS15075 (D6Z43_15075)	-	3194814..3194987 (+)	174	WP_120652969.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31902.85 Da
• Isoelectric Point: 7.0714

>NTDB_id=317046 D6Z43_RS15035 WP_120652961.1 3190092..3190964(+) (pilD) [Pseudomonas sp. DY-1]
MQLIDFLASHALAFVFCALLLGLLVGSFLNVVIHRLPKMMVSDWQEQAREALSLPAEPKGPVFNLILPNSRCPHCSHEIR
AWENIPVVSYLALGGKCSSCKAPISKRYPLVELFCGALSAYVAWHFGFSWQTGTFLVLTWGLLAMSMIDVDHQLLPDVLV
LPLLWLGLILNSQGLFASLEDALWGAVAGYMSLWSVYWVFKLVTGKEGMGHGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMLRLRNQDTATPIPFGPYLAIAGWIALLWGDQITATYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=317046 D6Z43_RS15035 WP_120652961.1 3190092..3190964(+) (pilD) [Pseudomonas sp. DY-1]
ATGCAATTGATCGACTTTCTGGCCAGCCACGCGCTGGCCTTTGTTTTCTGCGCGCTGCTGCTTGGCCTGCTGGTGGGCAG
CTTCCTCAATGTGGTGATTCACCGCCTGCCGAAGATGATGGTTAGCGATTGGCAGGAGCAGGCCCGTGAAGCATTGAGCC
TGCCGGCGGAACCCAAGGGACCGGTGTTCAACCTGATCCTGCCGAACTCCCGCTGCCCCCATTGCAGCCATGAGATTCGC
GCCTGGGAGAACATCCCGGTGGTGAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCCCCATCAGCAAGCG
CTATCCCTTGGTTGAGCTGTTTTGCGGCGCGCTATCTGCCTATGTGGCATGGCATTTCGGATTCAGCTGGCAGACCGGAA
CTTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGTTGCTGCCGGACGTGCTGGTC
CTGCCTCTGCTCTGGCTTGGCCTCATCCTCAACAGCCAGGGCCTGTTCGCCAGCCTGGAAGACGCGCTCTGGGGAGCGGT
TGCCGGCTACATGAGCCTGTGGTCGGTTTACTGGGTGTTCAAGCTGGTGACTGGCAAGGAAGGTATGGGCCACGGCGACT
TCAAGTTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTACCGCTGACTATCCTGCTGTCATCCCTCGTGGGT
GCGGTGCTGGGTGTGATCATGCTGCGTCTGCGCAACCAGGACACGGCAACCCCCATCCCCTTCGGTCCGTACCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACGGCGACCTATCTGCAATTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.348	95.172	0.517
pilD	Vibrio campbellii strain DS40M4	53.48	94.138	0.503
pilD	Acinetobacter baumannii D1279779	49.306	99.31	0.49
pilD	Acinetobacter nosocomialis M2	48.611	99.31	0.483
pilD	Neisseria gonorrhoeae MS11	52.091	90.69	0.472