Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D6869_RS02105 Genome accession   NZ_CP032526
Coordinates   404081..404470 (+) Length   129 a.a.
NCBI ID   WP_011834458.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 4B0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 404081..412400 404081..404470 within 0


Gene organization within MGE regions


Location: 404081..412400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6869_RS02105 (D6869_02125) ssbB 404081..404470 (+) 390 WP_011834458.1 single-stranded DNA-binding protein Machinery gene
  D6869_RS02110 (D6869_02130) groES 404589..404873 (+) 285 WP_011834459.1 co-chaperone GroES -
  D6869_RS02115 (D6869_02135) groL 404960..406588 (+) 1629 WP_011834460.1 chaperonin GroEL -
  D6869_RS02120 (D6869_02140) - 406638..407450 (-) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  D6869_RS02125 (D6869_02150) - 407641..408996 (-) 1356 WP_173249647.1 ATP-binding protein -
  D6869_RS02130 (D6869_02155) yycF 409061..409762 (-) 702 WP_003131580.1 response regulator YycF -
  D6869_RS02135 (D6869_02160) tmk 409940..410575 (+) 636 WP_011834462.1 dTMP kinase -
  D6869_RS02140 (D6869_02165) - 410708..411568 (+) 861 WP_011834463.1 DNA polymerase III subunit delta' -
  D6869_RS02145 (D6869_02170) - 411618..412400 (+) 783 WP_011834464.1 stage 0 sporulation family protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14697.79 Da        Isoelectric Point: 8.3705

>NTDB_id=316703 D6869_RS02105 WP_011834458.1 404081..404470(+) (ssbB) [Lactococcus cremoris strain 4B0]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=316703 D6869_RS02105 WP_011834458.1 404081..404470(+) (ssbB) [Lactococcus cremoris strain 4B0]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTATATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

99.225

100

0.992
  ssbB Streptococcus sobrinus strain NIDR 6715-7

61.538

100

0.62
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372

Multiple sequence alignment