Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CDG62_RS17700 Genome accession   NZ_CP032286
Coordinates   3102176..3103402 (+) Length   408 a.a.
NCBI ID   WP_087527055.1    Uniprot ID   A0A385NAM1
Organism   Acinetobacter sp. WCHA55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3097176..3108402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS17655 (CDG62_17660) rimP 3097541..3098065 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  CDG62_RS17685 (CDG62_17690) secG 3099019..3099348 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  CDG62_RS17690 (CDG62_17695) tpiA 3099362..3100153 (-) 792 WP_087527053.1 triose-phosphate isomerase -
  CDG62_RS17695 (CDG62_17700) pilB 3100433..3102145 (+) 1713 WP_087527054.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDG62_RS17700 (CDG62_17705) pilC 3102176..3103402 (+) 1227 WP_087527055.1 type II secretion system F family protein Machinery gene
  CDG62_RS17705 (CDG62_17710) pilD 3103402..3104262 (+) 861 WP_087527056.1 prepilin peptidase Machinery gene
  CDG62_RS17710 (CDG62_17715) coaE 3104269..3104868 (+) 600 WP_087527057.1 dephospho-CoA kinase -
  CDG62_RS17715 (CDG62_17720) - 3104882..3105799 (-) 918 WP_162904047.1 DMT family transporter -
  CDG62_RS17720 (CDG62_17725) rlmB 3105832..3106581 (-) 750 WP_087527058.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CDG62_RS17725 (CDG62_17730) - 3106724..3107047 (-) 324 WP_087527059.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44842.25 Da        Isoelectric Point: 9.8063

>NTDB_id=314758 CDG62_RS17700 WP_087527055.1 3102176..3103402(+) (pilC) [Acinetobacter sp. WCHA55]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIIKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSEWMQKYWFILIILVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=314758 CDG62_RS17700 WP_087527055.1 3102176..3103402(+) (pilC) [Acinetobacter sp. WCHA55]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATTATCAAGAAAAAAGTGACGACACTGGACATCACAATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCACTGGTACAAGGTTTCGAAATTGTGGCTGAAGGTTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATCAAAGGCGAAGTGGAAGGTGGTAATACCTTTGCTGGAGCACTCAGAAAATATCCGCAATATTTCGACA
ACTTATTTTGTTCACTTGTTGAATCTGGCGAACAATCTGGTGCACTTGAGACCATGCTGGATCGTGTCGCGGTTTATAAA
GAAAAAAGTGAATTACTCAAACAAAAAATTAAGAAAGCTATGAAGTATCCAGCAACCGTGGTTGTAGTTGCCGTGATCGT
AACCATTATTTTGATGGTCAAAGTTGTACCTGTTTTCCAAGATTTATTTAGCTCATTTGGTGCAGACTTACCTGCATTCA
CCCAAATGGTGGTGAATATGTCTGAGTGGATGCAGAAATACTGGTTCATTTTAATTATTTTGGTCGGTGTGGTGATTACG
GCTTTACTCGAAACCAAAAAACGTAGTAAAAAGTTTCGTGACATGCTAGATAAAGCCGCGTTGAAAGCCCCGATTTTCGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGTCGTACGCTGTCCACAACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCTCTCGAGTCTACAGCAGGTGCCACTAATAACGTAGTCTATGAAGAAGCCGTGATGAAAATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCAATGCGTGCTACCAATAAATTCCCTTCCATGGCCGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCAACTCACTATGAAAACGAAGTCGATAATGCGGTGGATGGCT
TAACAGCAATGATGGAGCCTCTCATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385NAM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.216

100

0.892
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

62.408

99.755

0.623
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

42.157

100

0.422
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment