Detailed information NTG0314759

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CDG62_RS17705
• Genome accession: NZ_CP032286
• Coordinates: 3103402..3104262 (+)
• Length: 286 a.a.
• NCBI ID: WP_087527056.1
• Uniprot ID: A0A385NDG6
• Organism: Acinetobacter sp. WCHA55
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3098402..3109262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG62_RS17685 (CDG62_17690)	secG	3099019..3099348 (-)	330	WP_004692710.1	preprotein translocase subunit SecG	-
CDG62_RS17690 (CDG62_17695)	tpiA	3099362..3100153 (-)	792	WP_087527053.1	triose-phosphate isomerase	-
CDG62_RS17695 (CDG62_17700)	pilB	3100433..3102145 (+)	1713	WP_087527054.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CDG62_RS17700 (CDG62_17705)	pilC	3102176..3103402 (+)	1227	WP_087527055.1	type II secretion system F family protein	Machinery gene
CDG62_RS17705 (CDG62_17710)	pilD	3103402..3104262 (+)	861	WP_087527056.1	prepilin peptidase	Machinery gene
CDG62_RS17710 (CDG62_17715)	coaE	3104269..3104868 (+)	600	WP_087527057.1	dephospho-CoA kinase	-
CDG62_RS17715 (CDG62_17720)	-	3104882..3105799 (-)	918	WP_162904047.1	DMT family transporter	-
CDG62_RS17720 (CDG62_17725)	rlmB	3105832..3106581 (-)	750	WP_087527058.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
CDG62_RS17725 (CDG62_17730)	-	3106724..3107047 (-)	324	WP_087527059.1	pyrimidine/purine nucleoside phosphorylase	-
CDG62_RS17730 (CDG62_17735)	recN	3107438..3109099 (+)	1662	WP_087527060.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31982.37 Da
• Isoelectric Point: 8.0620

>NTDB_id=314759 CDG62_RS17705 WP_087527056.1 3103402..3104262(+) (pilD) [Acinetobacter sp. WCHA55]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA
IHWYQNIPVVSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVTVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAALGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=314759 CDG62_RS17705 WP_087527056.1 3103402..3104262(+) (pilD) [Acinetobacter sp. WCHA55]
ATGCAAGAAATAATTTCCTATCTTATCAATACTCCAATGGCGCTGTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTGAATGTGGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGTACCGACTGCCAACTTCTGCTTC
ATCCTGAGCAGCCGATTATTGATGAAACGAAACTCACGTTGAGTAAGCCTGCCTCAACCTGTCCAAAATGCAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTAGTGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
CATTCGCTATCCTGCAATTGAACTTCTGACTGCCATTTGTGCATTGGTCGTAGTTACAGTCTTTGGCCCAACGATTCAAA
TGCTGTTCGGTCTCGTACTCACGTATATTTTAATCGCCTTAACCTTTATTGATTTTGACACTCAGCTTTTACCTGATCGC
TATACCCTCACCCTTGCGGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCAGCCATTTGGGG
TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTACCTGTTTAAACTCATCACAGGCAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGTTGCTGCCACTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATCCTGCTCAAAGTTCGTAAAGAAAATCAGCCTTTTGCTTTTGGCCCATATATTGCCAT
TGCTGGATGGATTGCCTTCTTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: A0A385NDG6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	54.104	93.706	0.507
pilD	Vibrio campbellii strain DS40M4	51.685	93.357	0.483
pilD	Neisseria gonorrhoeae MS11	46.154	95.455	0.441