Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BEN74_RS09280 Genome accession   NZ_CP032279
Coordinates   1592743..1594872 (-) Length   709 a.a.
NCBI ID   WP_416240769.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587743..1599872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS09265 (BEN74_09265) - 1590198..1591019 (-) 822 WP_068912889.1 hypothetical protein -
  BEN74_RS09270 (BEN74_09270) aroB 1591064..1592143 (-) 1080 WP_068913002.1 3-dehydroquinate synthase -
  BEN74_RS09275 (BEN74_09275) aroK 1592161..1592706 (-) 546 WP_068912890.1 shikimate kinase AroK -
  BEN74_RS09280 (BEN74_09280) pilQ 1592743..1594872 (-) 2130 WP_416240769.1 type IV pilus secretin PilQ Machinery gene
  BEN74_RS09285 (BEN74_09285) pilP 1594934..1595461 (-) 528 WP_068912893.1 pilus assembly protein PilP Machinery gene
  BEN74_RS09290 (BEN74_09290) pilO 1595461..1596207 (-) 747 WP_068912896.1 type 4a pilus biogenesis protein PilO Machinery gene
  BEN74_RS09295 (BEN74_09295) pilN 1596204..1596869 (-) 666 WP_068912899.1 PilN domain-containing protein Machinery gene
  BEN74_RS09300 (BEN74_09300) comM 1596869..1597891 (-) 1023 WP_068912902.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 76418.81 Da        Isoelectric Point: 5.3500

>NTDB_id=314700 BEN74_RS09280 WP_416240769.1 1592743..1594872(-) (pilQ) [Acinetobacter sp. WCHAc010034]
MNQVFRQFAMGAVAMAVMQAASAQVSMTGIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLVLDFDKAQPNIKQTSI
PVATNEASSVEVASDAQRSRLTVNLADAGAFTTRVEGNTFILKINAASAAEAAQPAVQRQAQGISNIGFQRGSNGEGQIV
VDLLGGNTPVDVQQQGSKIVIRTLGNKVPAHLARRLNVNDFATPVATIDAQNDGGNGVITVQSSGSYEYMAYQTDNKLTV
SLKRPEDKNPLRSKAANHYTGKKISLDFQDIEVRRVLQLLADFTEINMVAADSVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGSVIWIAPVAELIKAEDEEAKAIAQSIKLAPIQTEYIKLSYAKAADVLKLLEESRDAKGSISNRTANSDSLALES
VLSPRGSAVADVRTNTLIVNDTAQNIDKVRKMIDLLDVAVKQVMVEARIVRATTDFTKEMGVKWGILSQGVTNNDSLLVG
GSDTTLWNLRKPTIDTTTGTATYDIQRPDNLNVDLGVTAQGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLT
ADKQPAKVASGTQIPYQSAESGGVNTVSKTEFVDATLSLDVTPSITPDGKIQMMLKIKNDSVGTPTPTGQYTINKNEINT
NVLVDNGETVVLGGIFEQMTTSNQTKVPFLGDLPYIGRLFRKDAKTDKKSELLIFVTPRIVNDSMAGNH

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=314700 BEN74_RS09280 WP_416240769.1 1592743..1594872(-) (pilQ) [Acinetobacter sp. WCHAc010034]
ATGAATCAAGTATTTCGTCAGTTTGCAATGGGTGCAGTCGCTATGGCGGTCATGCAGGCGGCCAGTGCTCAGGTCAGCAT
GACCGGCATCGTGCCGATGCAGATCCCGGGCCAGGGCACTGAAATCCGGGTGATGTTTAATGGCCTGCCGCCGCAGCCGC
AGGCGTATCAGCTGGAGCAGCCATCCCGCCTGGTGCTGGATTTTGATAAAGCGCAGCCGAATATCAAGCAGACTTCCATT
CCTGTTGCGACAAATGAAGCCAGCTCTGTTGAAGTTGCGTCAGATGCGCAGCGTTCGCGCTTAACGGTCAATTTGGCCGA
TGCCGGCGCATTTACAACCCGCGTTGAGGGCAATACCTTTATCCTGAAAATTAATGCCGCGTCGGCTGCTGAAGCTGCGC
AGCCTGCAGTGCAAAGGCAGGCGCAAGGCATTTCCAACATCGGTTTTCAGCGTGGCTCAAACGGCGAAGGCCAGATTGTT
GTGGACTTGCTGGGCGGAAATACCCCTGTTGATGTGCAGCAGCAGGGCAGCAAAATCGTGATCCGCACTTTGGGCAATAA
GGTTCCGGCGCATCTTGCCCGGCGCCTGAATGTCAATGACTTTGCCACGCCGGTTGCGACAATTGATGCGCAGAATGACG
GCGGCAACGGCGTGATTACGGTTCAGTCTTCCGGCAGCTATGAATATATGGCGTATCAGACCGATAATAAGCTGACAGTC
AGCCTGAAGCGCCCGGAAGACAAGAATCCGCTGCGTTCGAAAGCGGCCAATCATTATACGGGCAAAAAGATTTCTTTAGA
TTTCCAGGATATCGAAGTGCGCCGCGTGCTGCAGCTGCTGGCGGATTTTACCGAAATCAATATGGTGGCAGCCGACTCCG
TGCAAGGCAATATTACCCTGCGCTTGAAGGATGTGCCTTGGGATCAGGCGCTGGATATTGTCCTGAAGACCAAGAATCTG
GATAAGCGCCGCAATGGCAGCGTGATCTGGATCGCGCCGGTTGCTGAACTGATCAAAGCTGAAGATGAAGAAGCGAAAGC
AATTGCGCAAAGCATCAAGCTTGCTCCAATTCAAACGGAATACATCAAATTAAGCTATGCCAAAGCGGCGGATGTTTTAA
AGCTGCTGGAAGAATCCCGCGACGCTAAGGGCAGCATCTCAAACCGCACTGCGAATTCCGACTCGCTGGCGCTGGAAAGC
GTGCTGAGCCCGCGGGGCAGCGCTGTTGCTGACGTGCGCACCAACACTTTAATTGTCAATGATACCGCTCAGAATATTGA
TAAAGTCCGTAAAATGATTGACTTGCTGGATGTTGCAGTAAAGCAGGTCATGGTGGAGGCGCGCATTGTGCGGGCAACTA
CAGATTTCACCAAAGAAATGGGGGTGAAATGGGGAATACTGTCGCAGGGGGTTACCAATAATGATAGCCTGCTGGTTGGC
GGAAGCGATACAACGCTATGGAATTTAAGAAAACCTACTATTGATACAACAACCGGGACGGCGACTTATGATATCCAGCG
CCCTGATAACCTGAATGTGGATTTAGGTGTGACAGCGCAGGGGGCCAGCAGTATCGCTTTTGGCTTAATCAGCCTGTCAG
ATTTCATGCTGGACCTGGAGCTTTCCGCTTTGCAGGCGGACGGCTATGGCGAGGTGATTTCCACGCCGAAAGTCTTAACT
GCGGATAAGCAGCCTGCTAAAGTCGCATCAGGTACGCAAATTCCATATCAGTCTGCGGAAAGCGGCGGTGTAAATACAGT
TTCTAAAACGGAATTTGTCGATGCAACCCTAAGCTTGGATGTAACTCCTAGCATTACGCCTGACGGTAAGATCCAGATGA
TGCTGAAAATTAAAAATGATTCAGTGGGTACGCCTACACCGACCGGCCAATATACAATTAATAAGAATGAAATCAATACT
AATGTGTTGGTGGATAATGGCGAGACCGTTGTGCTCGGCGGTATCTTTGAGCAAATGACAACCTCTAATCAGACTAAAGT
GCCTTTCCTTGGCGATTTACCTTATATTGGCCGCTTATTCCGTAAAGACGCGAAGACGGATAAAAAGAGTGAGCTGCTGA
TTTTTGTTACGCCGCGAATTGTTAATGACAGTATGGCTGGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-442)

AMIN domain (AMIN)

(40-120)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(543-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.684

100

0.75
  pilQ Acinetobacter baumannii strain A118

73.546

100

0.749
  comQ Acinetobacter baylyi ADP1

69.402

100

0.704
  pilQ Pseudomonas aeruginosa PAK

40.594

99.718

0.405
  pilQ Legionella pneumophila strain Lp02

36.53

100

0.365
  pilQ Legionella pneumophila strain ERS1305867

36.558

99.154

0.362

Multiple sequence alignment