Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | LL1196_RS12125 | Genome accession | NZ_CP032148 |
| Coordinates | 2314101..2314451 (-) | Length | 116 a.a. |
| NCBI ID | WP_050574401.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain 1196 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 2314551..2318953 | 2314101..2314451 | flank | 100 |
Gene organization within MGE regions
Location: 2314101..2318953
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL1196_RS12125 (LL1196_2428) | comGC | 2314101..2314451 (-) | 351 | WP_050574401.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LL1196_RS12130 (LL1196_2429) | comGB | 2314496..2315521 (-) | 1026 | WP_050574400.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LL1196_RS12135 (LL1196_2430) | - | 2315421..2316242 (-) | 822 | Protein_2361 | ATPase, T2SS/T4P/T4SS family | - |
| LL1196_RS12140 (LL1196_2431) | - | 2316345..2317235 (+) | 891 | WP_205536422.1 | IS982 family transposase | - |
| LL1196_RS12145 (LL1196_2432) | comGA | 2317217..2317408 (-) | 192 | WP_014573341.1 | hypothetical protein | Machinery gene |
Sequence
Protein
Download Length: 116 a.a. Molecular weight: 13289.44 Da Isoelectric Point: 7.2003
>NTDB_id=314103 LL1196_RS12125 WP_050574401.1 2314101..2314451(-) (comGC) [Lactococcus cremoris strain 1196]
MSKALSLIKIHGRKLWQKKQKAFTLIEMLIVLAIISILILLFVPNLIKEKAQVQKTGEAAVVKVVESQAQLYELDHDNDK
PNLSELLSAGMITQKQVTAYDDYYDQNKNEQRNFDD
MSKALSLIKIHGRKLWQKKQKAFTLIEMLIVLAIISILILLFVPNLIKEKAQVQKTGEAAVVKVVESQAQLYELDHDNDK
PNLSELLSAGMITQKQVTAYDDYYDQNKNEQRNFDD
Nucleotide
Download Length: 351 bp
>NTDB_id=314103 LL1196_RS12125 WP_050574401.1 2314101..2314451(-) (comGC) [Lactococcus cremoris strain 1196]
ATGAGCAAAGCTTTGTCATTAATTAAAATTCACGGAAGAAAGCTTTGGCAAAAAAAGCAAAAAGCATTTACCTTGATTGA
GATGTTAATTGTGTTGGCAATTATCAGTATTTTAATTTTGCTTTTTGTGCCAAATTTGATAAAAGAAAAAGCACAAGTTC
AAAAAACTGGTGAAGCAGCAGTAGTTAAAGTAGTTGAAAGTCAGGCACAACTTTATGAGTTGGATCATGATAATGATAAG
CCAAACCTATCAGAACTTTTAAGTGCGGGGATGATTACGCAAAAGCAAGTCACGGCCTATGATGATTACTATGACCAGAA
TAAAAATGAACAGCGCAATTTCGATGATTAG
ATGAGCAAAGCTTTGTCATTAATTAAAATTCACGGAAGAAAGCTTTGGCAAAAAAAGCAAAAAGCATTTACCTTGATTGA
GATGTTAATTGTGTTGGCAATTATCAGTATTTTAATTTTGCTTTTTGTGCCAAATTTGATAAAAGAAAAAGCACAAGTTC
AAAAAACTGGTGAAGCAGCAGTAGTTAAAGTAGTTGAAAGTCAGGCACAACTTTATGAGTTGGATCATGATAATGATAAG
CCAAACCTATCAGAACTTTTAAGTGCGGGGATGATTACGCAAAAGCAAGTCACGGCCTATGATGATTACTATGACCAGAA
TAAAAATGAACAGCGCAATTTCGATGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Lactococcus lactis subsp. cremoris KW2 |
98.276 |
100 |
0.983 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
58.586 |
85.345 |
0.5 |
| comGC/cglC | Streptococcus mitis SK321 |
55.882 |
87.931 |
0.491 |
| comGC/cglC | Streptococcus pneumoniae R6 |
53.922 |
87.931 |
0.474 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
53.922 |
87.931 |
0.474 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
53.922 |
87.931 |
0.474 |
| comGC/cglC | Streptococcus pneumoniae D39 |
53.922 |
87.931 |
0.474 |
| comYC | Streptococcus mutans UA140 |
59.14 |
80.172 |
0.474 |
| comYC | Streptococcus mutans UA159 |
59.14 |
80.172 |
0.474 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
55.67 |
83.621 |
0.466 |
| comYC | Streptococcus suis isolate S10 |
56.818 |
75.862 |
0.431 |