Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CDG61_RS15745 Genome accession   NZ_CP032143
Coordinates   3225952..3227178 (+) Length   408 a.a.
NCBI ID   WP_087550410.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3220952..3232178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS15705 (CDG61_15705) rimP 3221469..3221993 (-) 525 WP_087550414.1 ribosome maturation factor RimP -
  CDG61_RS15730 (CDG61_15730) secG 3222788..3223120 (-) 333 WP_087550413.1 preprotein translocase subunit SecG -
  CDG61_RS15735 (CDG61_15735) tpiA 3223134..3223925 (-) 792 WP_087550412.1 triose-phosphate isomerase -
  CDG61_RS15740 (CDG61_15740) pilB 3224211..3225923 (+) 1713 WP_087550411.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDG61_RS15745 (CDG61_15745) pilC 3225952..3227178 (+) 1227 WP_087550410.1 type II secretion system F family protein Machinery gene
  CDG61_RS15750 (CDG61_15750) pilD 3227178..3228038 (+) 861 WP_087550409.1 prepilin peptidase Machinery gene
  CDG61_RS15755 (CDG61_15755) coaE 3228053..3228652 (+) 600 WP_087550408.1 dephospho-CoA kinase -
  CDG61_RS15760 (CDG61_15760) - 3228654..3229568 (-) 915 WP_087550407.1 DMT family transporter -
  CDG61_RS15765 (CDG61_15765) rlmB 3229603..3230352 (-) 750 WP_087550406.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CDG61_RS15770 (CDG61_15770) - 3230484..3230807 (-) 324 WP_087512620.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44900.41 Da        Isoelectric Point: 9.8660

>NTDB_id=313877 CDG61_RS15745 WP_087550410.1 3225952..3227178(+) (pilC) [Acinetobacter sp. WCHAc010052]
MAVKKAQMMPNFIYEGVDRKGAKIKGEMPARNMALAKVTLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPASVVVVAIIVTIILMVKVVPVFQELFSSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGAVIT
AFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIRDDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=313877 CDG61_RS15745 WP_087550410.1 3225952..3227178(+) (pilC) [Acinetobacter sp. WCHAc010052]
ATGGCTGTCAAAAAAGCACAGATGATGCCAAACTTCATCTACGAAGGGGTTGATCGTAAAGGGGCTAAGATCAAAGGGGA
AATGCCGGCACGAAACATGGCTTTAGCCAAAGTGACGCTGCGCAAGCAAGGGATCACCATCAAAACCATCCGGGAAAAGA
AAAAAAATATTCTCGAAGGGCTGATGAAGAAAAAAGTATCCACGCTTGATATCACCATCTTCACCCGTCAGCTTGCAACC
ATGATGAAAGCCGGTGTACCTTTGGTACAAAGCTTTGAAATTGTTGCAGAAGGTCTTGAAAACCCTGCCATGCGTGAAGT
TGTCCTTGGCATTAAAGGTGAAGTCGAAGGCGGTAATACTTTTGCAGGTGCCCTGAAAAAATATCCACAGTATTTTGACA
ACCTGTTCTGTTCACTGGTCGAATCAGGGGAACAGTCTGGTGCTCTTGAAACCATGCTGGACCGTGTTGCAATCTATAAA
GAAAAAAGCGAACTGCTTAAACAGAAAATTAAAAAGGCCATGAAGTATCCAGCCAGTGTAGTTGTGGTCGCTATTATTGT
AACAATTATTCTGATGGTTAAAGTCGTGCCTGTTTTCCAGGAGCTGTTCTCCTCATTTGGTGCAGATCTGCCGGCATTTA
CTAAAATGGTGGTGAACATGTCTGAGTGGATGCAGAAATATTGGTTCATTCTGATTATTGCTATTGGTGCCGTCATTACA
GCTTTCCTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATTTCCTGGATAAAGCAGCACTGAAAGCACCTATTTTTGG
TGATCTGGTGTATAAAGCCATTATTGCCCGTTACAGTCGTACTCTTGCAACCACTTTCGCAGCCGGTGTACCTTTGATTG
AAGCACTTGAATCTACAGCAGGCGCAACCAATAACGTGGTTTATGAACAGGCGGTCATGAAAATCAGAGATGACGTTGCC
ACAGGACAACAACTCCAGTTCGCCATGCGGGTTACGGATAAGTTCCCATCCATGGCAGTACAGATGGTTGCAATTGGCGA
AGAATCCGGTGCACTGGATGCCATGCTGGATAAAGTGGCTACACACTATGAAAATGAAGTGGATAATGCCGTGGATGGAT
TGACCTCCATGATGGAACCTTTGATCATGGCTGTACTGGGTGTACTGGTCGGTGGTCTGGTTATCGCAATGTATCTACCA
ATCTTCCAGATGGGCTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.706

100

0.897
  pilC Acinetobacter baylyi ADP1

83.333

100

0.833
  pilC Pseudomonas stutzeri DSM 10701

61.713

97.304

0.6
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.382

100

0.434
  pilC Vibrio campbellii strain DS40M4

40.943

98.775

0.404
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment