Detailed information NTG0313878

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CDG61_RS15750
• Genome accession: NZ_CP032143
• Coordinates: 3227178..3228038 (+)
• Length: 286 a.a.
• NCBI ID: WP_087550409.1
• Uniprot ID: -
• Organism: Acinetobacter sp. WCHAc010052
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3222178..3233038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG61_RS15730 (CDG61_15730)	secG	3222788..3223120 (-)	333	WP_087550413.1	preprotein translocase subunit SecG	-
CDG61_RS15735 (CDG61_15735)	tpiA	3223134..3223925 (-)	792	WP_087550412.1	triose-phosphate isomerase	-
CDG61_RS15740 (CDG61_15740)	pilB	3224211..3225923 (+)	1713	WP_087550411.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CDG61_RS15745 (CDG61_15745)	pilC	3225952..3227178 (+)	1227	WP_087550410.1	type II secretion system F family protein	Machinery gene
CDG61_RS15750 (CDG61_15750)	pilD	3227178..3228038 (+)	861	WP_087550409.1	prepilin peptidase	Machinery gene
CDG61_RS15755 (CDG61_15755)	coaE	3228053..3228652 (+)	600	WP_087550408.1	dephospho-CoA kinase	-
CDG61_RS15760 (CDG61_15760)	-	3228654..3229568 (-)	915	WP_087550407.1	DMT family transporter	-
CDG61_RS15765 (CDG61_15765)	rlmB	3229603..3230352 (-)	750	WP_087550406.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
CDG61_RS15770 (CDG61_15770)	-	3230484..3230807 (-)	324	WP_087512620.1	pyrimidine/purine nucleoside phosphorylase	-
CDG61_RS15775 (CDG61_15775)	-	3230889..3232187 (-)	1299	WP_087550405.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31740.76 Da
• Isoelectric Point: 7.4687

>NTDB_id=313878 CDG61_RS15750 WP_087550409.1 3227178..3228038(+) (pilD) [Acinetobacter sp. WCHAc010052]
MQEIISYLSTTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQEWRQECQLYLHPDHPPEPETPITLSKPASTCPKCQSE
IRWYQNIPVVSWLALRGKCGNCSNPISIRYPFIELLTAACSLTVVAVFGPSIQMLAGLLLTWVLIALTFIDFDTQLLPDR
YTLPLAAIGLAVNSYSVFTSPAASIWGYIIGFLCLWVVYYLFKVVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSV
VGAVIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=313878 CDG61_RS15750 WP_087550409.1 3227178..3228038(+) (pilD) [Acinetobacter sp. WCHAc010052]
ATGCAGGAAATTATCTCTTATTTAAGTACAACCCCAACTGCACTTTATCTGGCAGTTGGGATTTTCAGTTTATGTATCGG
CAGTTTTCTGAATGTCGTTATTTATCGCACCCCGAAAATGATGGAACAGGAATGGCGACAGGAATGTCAGCTGTACCTGC
ATCCAGATCACCCACCTGAACCTGAAACTCCAATAACGCTGAGCAAACCCGCATCGACCTGCCCCAAGTGTCAGTCAGAA
ATCCGCTGGTATCAGAATATTCCTGTTGTCAGCTGGCTGGCATTACGTGGCAAATGTGGTAACTGCTCCAATCCAATCAG
TATCCGCTATCCTTTTATTGAACTGCTGACGGCGGCCTGCTCCCTGACTGTCGTTGCGGTATTTGGTCCATCCATTCAGA
TGCTTGCAGGACTGCTACTGACCTGGGTATTGATTGCATTAACCTTCATAGATTTTGACACACAGTTACTGCCTGACCGT
TATACCCTGCCACTTGCAGCGATTGGCCTTGCGGTAAACAGCTATTCAGTATTCACATCCCCTGCTGCATCCATATGGGG
ATATATCATTGGCTTCCTTTGCCTCTGGGTCGTCTATTATCTGTTTAAAGTTGTGACCGGCAAAGAAGGCATGGGTTATG
GCGACTTTAAACTGCTGGCTGCCCTGGGTGCCTGGATGGGTCCTTTGCTCCTGCCTTTGATTGTGTTACTTTCATCTGTG
GTCGGTGCGGTAATTGGTATTATTTTACTGAAAATCCGTAAAGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCCAT
CGCTGGCTGGATTGCCTTTTTATGGGGTGAACAGATCATGAAAATTTATCTTGGGCAGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	76.491	99.65	0.762
pilD	Acinetobacter nosocomialis M2	75.789	99.65	0.755
pilD	Vibrio campbellii strain DS40M4	55.926	94.406	0.528
pilD	Vibrio cholerae strain A1552	55.597	93.706	0.521
pilD	Neisseria gonorrhoeae MS11	45.756	94.755	0.434