Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E3155_RS19680 Genome accession   NZ_CP038394
Coordinates   3984874..3985479 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O55:H7 strain DEC5A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3979874..3990479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3155_RS19660 (E3155_20150) aes 3980015..3980974 (+) 960 WP_000801801.1 acetyl esterase -
  E3155_RS19665 (E3155_20155) hemH 3980971..3981933 (-) 963 WP_001250105.1 ferrochelatase -
  E3155_RS19670 (E3155_20160) adk 3982065..3982709 (-) 645 WP_001417730.1 adenylate kinase -
  E3155_RS19675 (E3155_20165) htpG 3982890..3984764 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  E3155_RS19680 (E3155_20170) recR 3984874..3985479 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E3155_RS19685 (E3155_20175) ybaB 3985479..3985808 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E3155_RS19690 (E3155_20180) dnaX 3985861..3987792 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  E3155_RS19695 (E3155_20185) apt 3987921..3988472 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  E3155_RS19700 (E3155_20190) ybaN 3988625..3989002 (-) 378 WP_001188905.1 DUF454 family protein -
  E3155_RS19705 (E3155_20195) priC 3989072..3989599 (+) 528 WP_000844883.1 primosomal replication protein N'' -
  E3155_RS19710 (E3155_20200) rsmS 3989613..3989777 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=313876 E3155_RS19680 WP_001195025.1 3984874..3985479(-) (recR) [Escherichia coli O55:H7 strain DEC5A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=313876 E3155_RS19680 WP_001195025.1 3984874..3985479(-) (recR) [Escherichia coli O55:H7 strain DEC5A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment